RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MPHOSPH8Q99549 860 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 ST7Q9NRC1 585 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 NSFL1CQ9UNZ2 370 aaKnown RBP12.01□□□□□ -0.49
SYNE1-203ENST00000354674 RAB3GAP1Q15042 981 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 ANKRD18AQ8IVF6 992 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 CCDC24Q8N4L8 307 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 CCDC39Q9UFE4 941 aa12.01□□□□□ -0.49
SYNE1-203ENST00000354674 AK9Q5TCS8 1911 aa12□□□□□ -0.49
SYNE1-203ENST00000354674 NPHP1O15259 732 aa12□□□□□ -0.49
SYNE1-203ENST00000354674 CELF1Q92879 486 aaKnown RBP12□□□□□ -0.49
SYNE1-203ENST00000354674 TOMM22Q9NS69 142 aa12□□□□□ -0.49
SYNE1-203ENST00000354674 HOXA10P31260 410 aaPredicted RBP12□□□□□ -0.49
SYNE1-203ENST00000354674 RPS8P62241 208 aaKnown RBP12□□□□□ -0.49
SYNE1-203ENST00000354674 XAGE2Q96GT9 111 aa12□□□□□ -0.49
SYNE1-203ENST00000354674 ZNF512BQ96KM6 892 aaPredicted RBP12□□□□□ -0.49
SYNE1-203ENST00000354674 RIOK3O14730 519 aaKnown RBP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 NOLC1Q14978 699 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 PUM3Q15397 648 aaKnown RBP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 CNTROBQ8N137 903 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 DNAJC2Q99543 621 aaKnown RBP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 HAUS7Q99871 368 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 MMP10P09238 476 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 CHRNDQ07001 517 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 LPIN2Q92539 896 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 EVI5LQ96CN4 794 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 TIGD1Q96MW7 591 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 NEUROD6Q96NK8 337 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 BRIP1Q9BX63 1249 aa11.99□□□□□ -0.49
SYNE1-203ENST00000354674 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 V9GYY5 206 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-203ENST00000354674 CHMLP26374 656 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 ADORA1P30542 326 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 GRAPQ13588 217 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 DDX46Q7L014 1031 aaKnown RBP11.98□□□□□ -0.49
SYNE1-203ENST00000354674 GRAPLQ8TC17 118 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-203ENST00000354674 MINPP1Q9UNW1 487 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 KLHL40Q2TBA0 621 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 TICAM2Q86XR7 235 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 TAF3Q5VWG9 929 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 RILPL2Q969X0 211 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 BOLA2Q9H3K6 86 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 PARP3Q9Y6F1 533 aa11.98□□□□□ -0.49
SYNE1-203ENST00000354674 PATL2C9JE40 543 aaKnown RBP11.97□□□□□ -0.49
SYNE1-203ENST00000354674 TNNT1P13805 278 aa11.97□□□□□ -0.49
SYNE1-203ENST00000354674 LRRC37AA6NMS7 1700 aa11.97□□□□□ -0.49
SYNE1-203ENST00000354674 RFX7Q2KHR2 1363 aa11.97□□□□□ -0.49
SYNE1-203ENST00000354674 MAP4K4O95819 1239 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-203ENST00000354674 CASC1Q6TDU7 716 aa11.97□□□□□ -0.49
SYNE1-203ENST00000354674 CRAMP1Q96RY5 1269 aa11.97□□□□□ -0.49
SYNE1-203ENST00000354674 HELBQ8NG08 1087 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-203ENST00000354674 SLC16A10Q8TF71 515 aa11.96□□□□□ -0.49
SYNE1-203ENST00000354674 USP25Q9UHP3 1055 aa11.96□□□□□ -0.49
SYNE1-203ENST00000354674 COL11A2P13942 1736 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-203ENST00000354674 TAF5LO75529 589 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 ARID4AP29374 1257 aaPredicted RBP11.96□□□□□ -0.5
SYNE1-203ENST00000354674 UBE4AQ14139 1066 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 CCDC158Q5M9N0 1113 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 MSL1Q68DK7 614 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 SPC24Q8NBT2 197 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 UPF1Q92900 1129 aaKnown RBP eCLIP11.96□□□□□ -0.5
SYNE1-203ENST00000354674 RBM17Q96I25 401 aaKnown RBP11.96□□□□□ -0.5
SYNE1-203ENST00000354674 AKAP11Q9UKA4 1901 aa11.96□□□□□ -0.5
SYNE1-203ENST00000354674 SLC5A1P13866 664 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 GPATCH11Q8N954 259 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 RPGRQ92834 1020 aaKnown RBP11.95□□□□□ -0.5
SYNE1-203ENST00000354674 PDLIM2Q96JY6 352 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 TMEM63CQ9P1W3 806 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 RBM25P49756 843 aaKnown RBP11.95□□□□□ -0.5
SYNE1-203ENST00000354674 GPT2Q8TD30 523 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 ESYT1Q9BSJ8 1104 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 PDGFDQ9GZP0 370 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-203ENST00000354674 ANKRD2Q9GZV1 360 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 IRS2Q9Y4H2 1338 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 SLFN14P0C7P3 912 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 SRGNP10124 158 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 LTBP1Q14766 1721 aa11.95□□□□□ -0.5
SYNE1-203ENST00000354674 BBOX1O75936 387 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 PDE6BP35913 854 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 GYS2P54840 703 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 SNRKQ9NRH2 765 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 IFIT1P09914 478 aaKnown RBP11.94□□□□□ -0.5
SYNE1-203ENST00000354674 TTC39AQ5SRH9 613 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 CCDC102BQ68D86 513 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 ZNF804BA4D1E1 1349 aa11.94□□□□□ -0.5
SYNE1-203ENST00000354674 SNAP23O00161 211 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 HIP1O00291 1037 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 EPB41L2O43491 1005 aaKnown RBP11.93□□□□□ -0.5
SYNE1-203ENST00000354674 GDPD2Q9HCC8 539 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 PAG1Q9NWQ8 432 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 UQCRFS1P1P0C7P4 283 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 NPR1P16066 1061 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 SCARF1Q14162 830 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 GORABQ5T7V8 394 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 TMC4Q7Z404 712 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 KBTBD3Q8NAB2 608 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 ZNF592Q92610 1267 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 MCAMP43121 646 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 PHKA1P46020 1223 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 HS1BP3Q53T59 392 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 NOL8Q76FK4 1167 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms