RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 USP25Q9UHP3 1055 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 ARHGAP31Q2M1Z3 1444 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 TNNI2P48788 182 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 LARGE2Q8N3Y3 721 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 SPATA5Q8NB90 893 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 KCNG4Q8TDN1 519 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 CPLX3Q8WVH0 158 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 AATFQ9NY61 560 aaKnown RBP eCLIP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 A2ML1A8K2U0 1454 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 ABCC4O15439 1325 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 BMP15O95972 392 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 SSR1P43307 286 aaKnown RBP17.09■□□□□ 0.33
COL17A1-201ENST00000353479 WDR66Q8TBY9 1149 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 ZAP70P43403 619 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 ERMNQ8TAM6 284 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 CLIP2Q9UDT6 1046 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 AFMP43652 599 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 DNM1Q05193 864 aaKnown RBP17.09■□□□□ 0.33
COL17A1-201ENST00000353479 FAM182BQ5T319 152 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 ZNF771Q7L3S4 317 aaPredicted RBP17.09■□□□□ 0.33
COL17A1-201ENST00000353479 KRI1Q8N9T8 703 aaKnown RBP17.09■□□□□ 0.33
COL17A1-201ENST00000353479 ERBB3P21860 1342 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 AOX1Q06278 1338 aa17.09■□□□□ 0.33
COL17A1-201ENST00000353479 RAB3GAP1Q15042 981 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 CCDC40Q4G0X9 1142 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 TCERG1LQ5VWI1 586 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 CLASP1Q7Z460 1538 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 RPS8P62241 208 aaKnown RBP17.08■□□□□ 0.33
COL17A1-201ENST00000353479 USP48Q86UV5 1035 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 KBTBD3Q8NAB2 608 aa17.08■□□□□ 0.33
COL17A1-201ENST00000353479 POTEJP0CG39 1038 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 SYCP3Q8IZU3 236 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 SPA17Q15506 151 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 NUP88Q99567 741 aaPredicted RBP17.08■□□□□ 0.32
COL17A1-201ENST00000353479 SLC27A2O14975 620 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 STAT6P42226 847 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 GIMAP6Q6P9H5 292 aa17.08■□□□□ 0.32
COL17A1-201ENST00000353479 CLTCL1P53675 1640 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 TBCAO75347 108 aaKnown RBP17.07■□□□□ 0.32
COL17A1-201ENST00000353479 BRINP3Q76B58 766 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 CALML3P27482 149 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 CRKLP46109 303 aaKnown RBP17.07■□□□□ 0.32
COL17A1-201ENST00000353479 PROSER3Q2NL68 480 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 BEND3Q5T5X7 828 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 PRDM1O75626 825 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 TRIM21P19474 475 aaKnown RBP17.07■□□□□ 0.32
COL17A1-201ENST00000353479 ZNF165P49910 485 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 TRIM75PA6NK02 468 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 SPDYE3A6NKU9 549 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 KRT2P35908 639 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 LRRC27Q9C0I9 530 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 EXOC1Q9NV70 894 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 FBXO3Q9UK99 471 aa17.07■□□□□ 0.32
COL17A1-201ENST00000353479 ZBTB38Q8NAP3 1195 aaPredicted RBP17.06■□□□□ 0.32
COL17A1-201ENST00000353479 PARP1P09874 1014 aaKnown RBP17.06■□□□□ 0.32
COL17A1-201ENST00000353479 STXBP4Q6ZWJ1 553 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 ANKARQ7Z5J8 1434 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 DESP17661 470 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 ALDH1B1P30837 517 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 EIF6P56537 245 aaKnown RBP17.06■□□□□ 0.32
COL17A1-201ENST00000353479 KLHL40Q2TBA0 621 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 USPL1Q5W0Q7 1092 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 MRPS27Q92552 414 aaKnown RBP17.06■□□□□ 0.32
COL17A1-201ENST00000353479 MAST3O60307 1309 aa17.06■□□□□ 0.32
COL17A1-201ENST00000353479 RPS6KB1P23443 525 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 TAF4BQ92750 862 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 ERBB4Q15303 1308 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 MAP3K15Q6ZN16 1313 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 KIF24Q5T7B8 1368 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 ZNF532Q9HCE3 1301 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 ERLIN2O94905 339 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 ECM2O94769 699 aaPredicted RBP17.05■□□□□ 0.32
COL17A1-201ENST00000353479 PRAMEF22A3QJZ6 481 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 TRIM37O94972 964 aa17.05■□□□□ 0.32
COL17A1-201ENST00000353479 SGSM2O43147 1006 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 RBM28Q9NW13 759 aaKnown RBP17.04■□□□□ 0.32
COL17A1-201ENST00000353479 TDRD12Q587J7 1177 aaKnown RBP17.04■□□□□ 0.32
COL17A1-201ENST00000353479 SPTLC2O15270 562 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 VPS36Q86VN1 386 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 GPCPD1Q9NPB8 672 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 ESPNB1AK53 854 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 PCCAP05165 728 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-201ENST00000353479 PDE6BP35913 854 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 RRAGBQ5VZM2 374 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 CCDC150Q8NCX0 1101 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 SUPT20HQ8NEM7 779 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 KDM2BQ8NHM5 1336 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 EDC3Q96F86 508 aaKnown RBP17.04■□□□□ 0.32
COL17A1-201ENST00000353479 ZBTB1Q9Y2K1 713 aa17.04■□□□□ 0.32
COL17A1-201ENST00000353479 SSH3Q8TE77 659 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 TRIM47Q96LD4 638 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 CTDSPL2Q05D32 466 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 ZSCAN23Q3MJ62 389 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 SNX14Q9Y5W7 946 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 GNA11P29992 359 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 MCM7P33993 719 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 CETN1Q12798 172 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 TMC6Q7Z403 805 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 RMND1Q9NWS8 449 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 BICD1Q96G01 975 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms