RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 KIAA2012Q0VF49 1180 aa25.58■■□□□ 1.69
SHMT1-202ENST00000352886 RBM43Q6ZSC3 357 aaKnown RBP25.58■■□□□ 1.69
SHMT1-202ENST00000352886 DZIP3Q86Y13 1208 aaKnown RBP25.58■■□□□ 1.69
SHMT1-202ENST00000352886 PLCH1Q4KWH8 1693 aa25.58■■□□□ 1.69
SHMT1-202ENST00000352886 CARMIL3Q8ND23 1372 aa25.58■■□□□ 1.69
SHMT1-202ENST00000352886 TPM2P07951 284 aa25.58■■□□□ 1.69
SHMT1-202ENST00000352886 CHMP4CQ96CF2 233 aa25.58■■□□□ 1.69
SHMT1-202ENST00000352886 FTOQ9C0B1 505 aaKnown RBP eCLIP25.58■■□□□ 1.69
SHMT1-202ENST00000352886 PDE8AO60658 829 aa25.57■■□□□ 1.68
SHMT1-202ENST00000352886 GUCY1B3Q02153 619 aa25.57■■□□□ 1.68
SHMT1-202ENST00000352886 R3HCC1Q9Y3T6 440 aaKnown RBP25.57■■□□□ 1.68
SHMT1-202ENST00000352886 PRC1O43663 620 aa25.57■■□□□ 1.68
SHMT1-202ENST00000352886 PDE8BO95263 885 aa25.57■■□□□ 1.68
SHMT1-202ENST00000352886 MB21D2Q8IYB1 491 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-202ENST00000352886 UBN2Q6ZU65 1347 aa25.56■■□□□ 1.68
SHMT1-202ENST00000352886 ERVV-1B6SEH8 477 aa25.56■■□□□ 1.68
SHMT1-202ENST00000352886 ZNF213O14771 459 aa25.56■■□□□ 1.68
SHMT1-202ENST00000352886 ADD2P35612 726 aa25.56■■□□□ 1.68
SHMT1-202ENST00000352886 IL6STP40189 918 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-202ENST00000352886 NCOA7Q8NI08 942 aa25.56■■□□□ 1.68
SHMT1-202ENST00000352886 ZNF512BQ96KM6 892 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-202ENST00000352886 TTC12Q9H892 705 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-202ENST00000352886 FDPSP14324 419 aaKnown RBP25.55■■□□□ 1.68
SHMT1-202ENST00000352886 ANO6Q4KMQ2 910 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 SLC9C2Q5TAH2 1124 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 ZSCAN25Q6NSZ9 544 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 RCOR1Q9UKL0 485 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 DDX60Q8IY21 1712 aaKnown RBP25.55■■□□□ 1.68
SHMT1-202ENST00000352886 DOT1LQ8TEK3 1739 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 RALYLQ86SE5 291 aaKnown RBP25.55■■□□□ 1.68
SHMT1-202ENST00000352886 LUZP1Q86V48 1076 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 USP28Q96RU2 1077 aa25.55■■□□□ 1.68
SHMT1-202ENST00000352886 TTF1Q15361 905 aaPredicted RBP25.54■■□□□ 1.68
SHMT1-202ENST00000352886 KLF18A0A0U1RQI7 1052 aa25.54■■□□□ 1.68
SHMT1-202ENST00000352886 PIH1D3Q9NQM4 214 aaKnown RBP25.54■■□□□ 1.68
SHMT1-202ENST00000352886 WNK3Q9BYP7 1800 aa25.54■■□□□ 1.68
SHMT1-202ENST00000352886 IDH1O75874 414 aaKnown RBP25.53■■□□□ 1.68
SHMT1-202ENST00000352886 ANTXR2P58335 489 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 CCDC102BQ68D86 513 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 COL16A1Q07092 1604 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-202ENST00000352886 PHKA1P46020 1223 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 TERF1P54274 439 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 SASS6Q6UVJ0 657 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 ZNF34Q8IZ26 560 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 ZNF396Q96N95 335 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-202ENST00000352886 CBX8Q9HC52 389 aa25.53■■□□□ 1.68
SHMT1-202ENST00000352886 GOLGA8BA8MQT2 603 aa25.52■■□□□ 1.68
SHMT1-202ENST00000352886 ATL3Q6DD88 541 aa25.52■■□□□ 1.68
SHMT1-202ENST00000352886 ILDR1Q86SU0 546 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-202ENST00000352886 ATRNO75882 1429 aa25.52■■□□□ 1.68
SHMT1-202ENST00000352886 CCAR1Q8IX12 1150 aaKnown RBP25.51■■□□□ 1.67
SHMT1-202ENST00000352886 HPS5Q9UPZ3 1129 aa25.51■■□□□ 1.67
SHMT1-202ENST00000352886 SLIT2O94813 1529 aa25.51■■□□□ 1.67
SHMT1-202ENST00000352886 HELBQ8NG08 1087 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-202ENST00000352886 DHX16O60231 1041 aaKnown RBP25.5■■□□□ 1.67
SHMT1-202ENST00000352886 ARID4AP29374 1257 aaPredicted RBP25.5■■□□□ 1.67
SHMT1-202ENST00000352886 GLIPR1L2Q4G1C9 344 aa25.5■■□□□ 1.67
SHMT1-202ENST00000352886 RAB11FIP4Q86YS3 637 aa25.5■■□□□ 1.67
SHMT1-202ENST00000352886 PIBF1Q8WXW3 757 aa25.5■■□□□ 1.67
SHMT1-202ENST00000352886 NBPF3Q9H094 633 aa25.5■■□□□ 1.67
SHMT1-202ENST00000352886 UBE3CQ15386 1083 aa25.49■■□□□ 1.67
SHMT1-202ENST00000352886 PUM3Q15397 648 aaKnown RBP25.49■■□□□ 1.67
SHMT1-202ENST00000352886 LRP5O75197 1615 aa25.49■■□□□ 1.67
SHMT1-202ENST00000352886 ZNF532Q9HCE3 1301 aa25.49■■□□□ 1.67
SHMT1-202ENST00000352886 SPC24Q8NBT2 197 aa25.49■■□□□ 1.67
SHMT1-202ENST00000352886 ROBO1Q9Y6N7 1651 aa25.49■■□□□ 1.67
SHMT1-202ENST00000352886 APPP05067 770 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 UQCRFS1P1P0C7P4 283 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 TRDNQ13061 729 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 OTUD7BQ6GQQ9 843 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 LPIN2Q92539 896 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 GOLPH3LQ9H4A5 285 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 MROH5Q6ZUA9 1318 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 WDR19Q8NEZ3 1342 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 A0A0G2JS52 829 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 C8orf76Q96K31 380 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 DNAJC25Q9H1X3 360 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 DENND2AQ9ULE3 1009 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 ARAP2Q8WZ64 1704 aa25.48■■□□□ 1.67
SHMT1-202ENST00000352886 CPLX1O14810 134 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 PDE6AP16499 860 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 FGFR2P21802 821 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 ORC3Q9UBD5 711 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-202ENST00000352886 WWC3Q9ULE0 1092 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 FAM177BA6PVY3 158 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 ME1P48163 572 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 ZNF165P49910 485 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 EIF5P55010 431 aaKnown RBP25.47■■□□□ 1.67
SHMT1-202ENST00000352886 SUSD4Q5VX71 490 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 CCDC73Q6ZRK6 1079 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 TBC1D10CQ8IV04 446 aa25.47■■□□□ 1.67
SHMT1-202ENST00000352886 COL22A1Q8NFW1 1626 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-202ENST00000352886 C4AP0C0L4 1744 aa25.46■■□□□ 1.67
SHMT1-202ENST00000352886 C4BP0C0L5 1744 aa25.46■■□□□ 1.67
SHMT1-202ENST00000352886 SNW1Q13573 536 aaKnown RBP25.46■■□□□ 1.67
SHMT1-202ENST00000352886 TCRBV5S4A2TA0A5A2 114 aa25.45■■□□□ 1.67
SHMT1-202ENST00000352886 NOLC1Q14978 699 aaKnown RBP eCLIP25.45■■□□□ 1.67
SHMT1-202ENST00000352886 INTS5Q6P9B9 1019 aaKnown RBP25.45■■□□□ 1.67
SHMT1-202ENST00000352886 AK7Q96M32 723 aa25.45■■□□□ 1.67
SHMT1-202ENST00000352886 GOLGA6L6A8MZA4 724 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms