RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ANKRD2Q9GZV1 360 aa15.25■□□□□ 0.03
CLK3-201ENST00000345005 TNS1Q9HBL0 1735 aaKnown RBP15.25■□□□□ 0.03
CLK3-201ENST00000345005 MSNP26038 577 aaKnown RBP15.24■□□□□ 0.03
CLK3-201ENST00000345005 MCM5P33992 734 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 KRT32Q14532 448 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 WASHC4Q2M389 1173 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 GAS2L3Q86XJ1 694 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 CCDC24Q8N4L8 307 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 APPBP2Q92624 585 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 TTC14Q96N46 770 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 FOXD4L1Q9NU39 408 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 MYH13Q9UKX3 1938 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 MAST3O60307 1309 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 SNAP23O00161 211 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 ST5P78524 1137 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 VPS53Q5VIR6 699 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 RUFY3Q7L099 469 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 CCDC125Q86Z20 511 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 GNL3LQ9NVN8 582 aaKnown RBP15.24■□□□□ 0.03
CLK3-201ENST00000345005 TFCP2L1Q9NZI6 479 aa15.24■□□□□ 0.03
CLK3-201ENST00000345005 SERPINB2P05120 415 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 BCAMP50895 628 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 CUL4AQ13619 759 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 ADCK5Q3MIX3 580 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 SLFNL1Q499Z3 407 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 PRR5LQ6MZQ0 368 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 FLAD1Q8NFF5 587 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 OSBP2Q969R2 916 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 PDRG1Q9NUG6 133 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 LAMA4Q16363 1823 aa15.23■□□□□ 0.03
CLK3-201ENST00000345005 RPAP1Q9BWH6 1393 aaPredicted RBP15.22■□□□□ 0.03
CLK3-201ENST00000345005 M0R2C6 588 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 ADD2P35612 726 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 RASGRF1Q13972 1273 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 UBE3CQ15386 1083 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 CAVIN4Q5BKX8 364 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 DEFB132Q7Z7B7 95 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 AKT1S1Q96B36 256 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 INTS4Q96HW7 963 aaKnown RBP15.22■□□□□ 0.03
CLK3-201ENST00000345005 PIH1D3Q9NQM4 214 aaKnown RBP15.22■□□□□ 0.03
CLK3-201ENST00000345005 LIMCH1Q9UPQ0 1083 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 IDH1O75874 414 aaKnown RBP15.22■□□□□ 0.03
CLK3-201ENST00000345005 HSPD1P10809 573 aaKnown RBP15.22■□□□□ 0.03
CLK3-201ENST00000345005 SLC9C2Q5TAH2 1124 aa15.22■□□□□ 0.03
CLK3-201ENST00000345005 OFD1O75665 1012 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 AK2P54819 239 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 MAP3K12Q12852 859 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 GRAPQ13588 217 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 BLOC1S2Q6QNY1 142 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 GRAPLQ8TC17 118 aaPredicted RBP15.21■□□□□ 0.03
CLK3-201ENST00000345005 MAP7D2Q96T17 732 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 ALDH8A1Q9H2A2 487 aaPredicted RBP15.21■□□□□ 0.03
CLK3-201ENST00000345005 PDCL3Q9H2J4 239 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 CTNNA3Q9UI47 895 aa15.21■□□□□ 0.03
CLK3-201ENST00000345005 ZNF804BA4D1E1 1349 aa15.21■□□□□ 0.02
CLK3-201ENST00000345005 CSPP1Q1MSJ5 1256 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 NOL8Q76FK4 1167 aaKnown RBP15.2■□□□□ 0.02
CLK3-201ENST00000345005 NLGN1Q8N2Q7 840 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 ZSCAN31Q96LW9 406 aaPredicted RBP15.2■□□□□ 0.02
CLK3-201ENST00000345005 PDE6AP16499 860 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 ANKRD1Q15327 319 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 ZNF827Q17R98 1081 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 VPS37DQ86XT2 251 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 KLHL34Q8N239 644 aa15.2■□□□□ 0.02
CLK3-201ENST00000345005 RPGRQ92834 1020 aaKnown RBP15.2■□□□□ 0.02
CLK3-201ENST00000345005 PUS7LQ9H0K6 701 aaKnown RBP15.2■□□□□ 0.02
CLK3-201ENST00000345005 POLRMTO00411 1230 aaKnown RBP15.19■□□□□ 0.02
CLK3-201ENST00000345005 MBD3O95983 291 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 CYP21A2P08686 494 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 CPA1P15085 419 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 RPS6KB1P23443 525 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 CRY2Q49AN0 593 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 RBM17Q96I25 401 aaKnown RBP15.19■□□□□ 0.02
CLK3-201ENST00000345005 ZNF532Q9HCE3 1301 aa15.19■□□□□ 0.02
CLK3-201ENST00000345005 NRXN2Q9P2S2 1712 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 SEMA3EO15041 775 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 GPAA1O43292 621 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 HMGB1P09429 215 aaKnown RBP15.18■□□□□ 0.02
CLK3-201ENST00000345005 GYG1P46976 350 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 FBXO33Q7Z6M2 555 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 COL23A1Q86Y22 540 aaPredicted RBP15.18■□□□□ 0.02
CLK3-201ENST00000345005 ZGPATQ8N5A5 531 aaKnown RBP15.18■□□□□ 0.02
CLK3-201ENST00000345005 FAM84BQ96KN1 310 aaPredicted RBP15.18■□□□□ 0.02
CLK3-201ENST00000345005 NEK1Q96PY6 1258 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 SH2B1Q9NRF2 756 aaPredicted RBP15.18■□□□□ 0.02
CLK3-201ENST00000345005 LMBRD1Q9NUN5 540 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 DENND2AQ9ULE3 1009 aa15.18■□□□□ 0.02
CLK3-201ENST00000345005 TCRBV5S4A2TA0A5A2 114 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 DDR1Q08345 913 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 MCTP1Q6DN14 999 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 WWC3Q9ULE0 1092 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 CCDC88AQ3V6T2 1871 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 LRP2BPQ9P2M1 347 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 NOL7Q9UMY1 257 aaKnown RBP15.17■□□□□ 0.02
CLK3-201ENST00000345005 LEMD3Q9Y2U8 911 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 TAF6LQ9Y6J9 622 aa15.17■□□□□ 0.02
CLK3-201ENST00000345005 ANKRD31Q8N7Z5 1873 aa15.16■□□□□ 0.02
CLK3-201ENST00000345005 WTIPA6NIX2 430 aaPredicted RBP15.16■□□□□ 0.02
CLK3-201ENST00000345005 ZBTB22O15209 634 aa15.16■□□□□ 0.02
CLK3-201ENST00000345005 ZNF500O60304 480 aaPredicted RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms