RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 MRPL42Q9Y6G3 142 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ANKRD31Q8N7Z5 1873 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC192P0DO97 292 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 PPP1R13LQ8WUF5 828 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MRFAP1Q9Y605 127 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 BRD1O95696 1058 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CLUL1Q15846 466 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 GOPCQ9HD26 462 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 USP28Q96RU2 1077 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 RAD54L2Q9Y4B4 1467 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MGARPQ8TDB4 240 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 GFM2Q969S9 779 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ERLIN1O75477 346 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 POU5F1Q01860 360 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC96Q2M329 555 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CHRM1P11229 460 aaPredicted RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ARMC9Q7Z3E5 817 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 COMMD10Q9Y6G5 202 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 SGSM2O43147 1006 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 SURF6O75683 361 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 EIF5P55010 431 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 LZICQ8WZA0 190 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ELMO3Q96BJ8 720 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CASQ1P31415 396 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 NUMBP49757 651 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MAML3Q96JK9 1138 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 PARP4Q9UKK3 1724 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 NBPF11Q86T75 865 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 EIF3DO15371 548 aaKnown RBP eCLIP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 PPP4R3AQ6IN85 833 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 EXOC4Q96A65 974 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 PPIP5K1Q6PFW1 1433 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ZNF513Q8N8E2 541 aaPredicted RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ELOA2Q8IYF1 753 aaPredicted RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 PDE6AP16499 860 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC129Q6ZRS4 1044 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ADAT2Q7Z6V5 191 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 MICAL1Q8TDZ2 1067 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 MPHOSPH8Q99549 860 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ABCF2Q9UG63 623 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 MINK1Q8N4C8 1332 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 HMGB3O15347 200 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 SYT10Q6XYQ8 523 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 DEPDC5O75140 1603 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 PREX2Q70Z35 1606 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ANKRD20A12PQ8NF67 263 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ABCC1P33527 1531 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CTIFO43310 598 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 PDE1CQ14123 709 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ZNF280DQ6N043 979 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 C1orf131Q8NDD1 294 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 KIAA1217Q5T5P2 1943 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ERBB4Q15303 1308 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 BUB1BO60566 1050 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 TMTC2Q8N394 836 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 BABAM1Q9NWV8 329 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ABCA6Q8N139 1617 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 BTN2A1Q7KYR7 527 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CKAP5Q14008 2032 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 PPP2R5EQ16537 467 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 NFXL1Q6ZNB6 911 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 HELBQ8NG08 1087 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 YIPF3Q9GZM5 350 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 PRPF40BQ6NWY9 871 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 RUNDC1Q96C34 613 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 EDC3Q96F86 508 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CALR3Q96L12 384 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 NCAPGQ9BPX3 1015 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 A1BGP04217 495 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 KIAA0586Q9BVV6 1533 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ARFGAP3Q9NP61 516 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 FAM184BQ9ULE4 1060 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 K7ELQ4 463 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 ARHGAP27Q6ZUM4 889 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 APBB1IPQ7Z5R6 666 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CMTR1Q8N1G2 835 aaKnown RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 HCLS1P14317 486 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-201ENST00000341594 TMCO5AQ8N6Q1 288 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 CNTRLQ7Z7A1 2325 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 KIF4BQ2VIQ3 1234 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 AP1ARQ63HQ0 302 aa4.03□□□□□ -1.76
SYNE1-201ENST00000341594 FAM83GA6ND36 823 aa4.03□□□□□ -1.77
SYNE1-201ENST00000341594 PYM1Q9BRP8 204 aaKnown RBP4.03□□□□□ -1.77
SYNE1-201ENST00000341594 QRICH2Q9H0J4 1663 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ADSLP30566 484 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 HIC1Q14526 733 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MAEAQ7L5Y9 396 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MYO1AQ9UBC5 1043 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 SLC4A2P04920 1241 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ZBTB17Q13105 803 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 RRS1Q15050 365 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 E2F5Q15329 346 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ANKRD13CQ8N6S4 541 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PA2G4Q9UQ80 394 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ZNF521Q96K83 1311 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 FCHSD1Q86WN1 690 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 IQUBQ8NA54 791 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 HOMER3Q9NSC5 361 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms