RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 GOLIM4O00461 696 aa17.8■□□□□ 0.44
TPM3-208ENST00000341485 SF3B3Q15393 1217 aaKnown RBP17.8■□□□□ 0.44
TPM3-208ENST00000341485 TTC39AQ5SRH9 613 aa17.8■□□□□ 0.44
TPM3-208ENST00000341485 CCDC183Q5T5S1 534 aa17.8■□□□□ 0.44
TPM3-208ENST00000341485 LARP1BQ659C4 914 aaKnown RBP17.8■□□□□ 0.44
TPM3-208ENST00000341485 NLRP3Q96P20 1036 aa17.8■□□□□ 0.44
TPM3-208ENST00000341485 PAG1Q9NWQ8 432 aa17.8■□□□□ 0.44
TPM3-208ENST00000341485 PDE8BO95263 885 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 NFIXQ14938 502 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 SLFNL1Q499Z3 407 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 NEK1Q96PY6 1258 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 SPEF2Q9C093 1822 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 CYP21A2P08686 494 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 IFIT1P09914 478 aaKnown RBP17.79■□□□□ 0.44
TPM3-208ENST00000341485 ADORA1P30542 326 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 C3orf67Q6ZVT6 689 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 ZSCAN30Q86W11 494 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 TFCP2L1Q9NZI6 479 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 CASZ1Q86V15 1759 aa17.79■□□□□ 0.44
TPM3-208ENST00000341485 STK3Q13188 491 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 TPRNQ4KMQ1 711 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 CDC37L1Q7L3B6 337 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 ANKRD18AQ8IVF6 992 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 CCDC24Q8N4L8 307 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 VGLL2Q8N8G2 317 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 LAMA4Q16363 1823 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 GYS1P13807 737 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 CSPP1Q1MSJ5 1256 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 HS1BP3Q53T59 392 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 HELLSQ9NRZ9 838 aa17.78■□□□□ 0.44
TPM3-208ENST00000341485 TNS1Q9HBL0 1735 aaKnown RBP17.78■□□□□ 0.44
TPM3-208ENST00000341485 PUM3Q15397 648 aaKnown RBP17.77■□□□□ 0.44
TPM3-208ENST00000341485 ZMYM1Q5SVZ6 1142 aa17.77■□□□□ 0.44
TPM3-208ENST00000341485 CNBD1Q8NA66 436 aa17.77■□□□□ 0.44
TPM3-208ENST00000341485 HELBQ8NG08 1087 aaPredicted RBP17.77■□□□□ 0.44
TPM3-208ENST00000341485 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.77■□□□□ 0.44
TPM3-208ENST00000341485 PDIA4P13667 645 aaKnown RBP17.76■□□□□ 0.43
TPM3-208ENST00000341485 PDCP20941 246 aa17.76■□□□□ 0.43
TPM3-208ENST00000341485 STOX1Q6ZVD7 989 aa17.76■□□□□ 0.43
TPM3-208ENST00000341485 ZNF827Q17R98 1081 aa17.76■□□□□ 0.43
TPM3-208ENST00000341485 Q6ZUG5 572 aa17.76■□□□□ 0.43
TPM3-208ENST00000341485 SLC5A1P13866 664 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 FERMT3Q86UX7 667 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 TICAM2Q86XR7 235 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 LPIN2Q92539 896 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 GTF3C6Q969F1 213 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 DSCC1Q9BVC3 393 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 LETM1O95202 739 aaPredicted RBP17.75■□□□□ 0.43
TPM3-208ENST00000341485 AKT1S1Q96B36 256 aa17.75■□□□□ 0.43
TPM3-208ENST00000341485 CHRNDQ07001 517 aa17.74■□□□□ 0.43
TPM3-208ENST00000341485 EP400Q96L91 3159 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 RNF113AO15541 343 aaKnown RBP17.73■□□□□ 0.43
TPM3-208ENST00000341485 JAK2O60674 1132 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 ST5P78524 1137 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 FKBP4Q02790 459 aaKnown RBP eCLIP17.73■□□□□ 0.43
TPM3-208ENST00000341485 FAM173BQ6P4H8 233 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 TTC6Q86TZ1 520 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 LRRC2Q9BYS8 371 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 MAST3O60307 1309 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 RGPD3A6NKT7 1758 aaPredicted RBP17.73■□□□□ 0.43
TPM3-208ENST00000341485 RGPD4Q7Z3J3 1758 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 SERPINB2P05120 415 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 FGFR2P21802 821 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 KRT85P78386 507 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 FLAD1Q8NFF5 587 aa17.73■□□□□ 0.43
TPM3-208ENST00000341485 BSDC1Q9NW68 430 aaPredicted RBP17.73■□□□□ 0.43
TPM3-208ENST00000341485 A0A0G2JLW4 131 aa17.72■□□□□ 0.43
TPM3-208ENST00000341485 HSPD1P10809 573 aaKnown RBP17.72■□□□□ 0.43
TPM3-208ENST00000341485 CELF1Q92879 486 aaKnown RBP17.72■□□□□ 0.43
TPM3-208ENST00000341485 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.72■□□□□ 0.43
TPM3-208ENST00000341485 NOL7Q9UMY1 257 aaKnown RBP17.72■□□□□ 0.43
TPM3-208ENST00000341485 COL4A1P02462 1669 aa17.72■□□□□ 0.43
TPM3-208ENST00000341485 ARAP2Q8WZ64 1704 aa17.72■□□□□ 0.43
TPM3-208ENST00000341485 TAF1P21675 1872 aa17.72■□□□□ 0.43
TPM3-208ENST00000341485 M0R2C6 588 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 TM4SF1P30408 202 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 PRR5LQ6MZQ0 368 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 BRF1Q92994 677 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 TNRC6CQ9HCJ0 1690 aaKnown RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 HMGB1P09429 215 aaKnown RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 MSNP26038 577 aaKnown RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 RPS8P62241 208 aaKnown RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 DHX32Q7L7V1 743 aaKnown RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 COL23A1Q86Y22 540 aaPredicted RBP17.71■□□□□ 0.43
TPM3-208ENST00000341485 FAM184AQ8NB25 1140 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 FUCA2Q9BTY2 467 aa17.71■□□□□ 0.43
TPM3-208ENST00000341485 ELP1O95163 1332 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 UQCRFS1P1P0C7P4 283 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 SCRN1Q12765 414 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 UVSSAQ2YD98 709 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 CCDC102BQ68D86 513 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 NAP1L5Q96NT1 182 aaPredicted RBP17.7■□□□□ 0.42
TPM3-208ENST00000341485 EXOSC10Q01780 885 aaKnown RBP17.7■□□□□ 0.42
TPM3-208ENST00000341485 SCARF1Q14162 830 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 LRRFIP1Q32MZ4 808 aaKnown RBP17.7■□□□□ 0.42
TPM3-208ENST00000341485 GIMAP6Q6P9H5 292 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 OSBP2Q969R2 916 aa17.7■□□□□ 0.42
TPM3-208ENST00000341485 ZNF512BQ96KM6 892 aaPredicted RBP17.7■□□□□ 0.42
TPM3-208ENST00000341485 SNAP23O00161 211 aa17.69■□□□□ 0.42
TPM3-208ENST00000341485 PFKFB2O60825 505 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms