RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZNF532Q9HCE3 1301 aa15.98■□□□□ 0.15
HMGB1-202ENST00000339872 GPAA1O43292 621 aa15.98■□□□□ 0.15
HMGB1-202ENST00000339872 COL9A3Q14050 684 aaPredicted RBP15.98■□□□□ 0.15
HMGB1-202ENST00000339872 UBE3CQ15386 1083 aa15.98■□□□□ 0.15
HMGB1-202ENST00000339872 CWC22Q9HCG8 908 aaKnown RBP15.98■□□□□ 0.15
HMGB1-202ENST00000339872 MAP3K12Q12852 859 aa15.97■□□□□ 0.15
HMGB1-202ENST00000339872 RAB3GAP1Q15042 981 aa15.97■□□□□ 0.15
HMGB1-202ENST00000339872 LIMCH1Q9UPQ0 1083 aa15.97■□□□□ 0.15
HMGB1-202ENST00000339872 COL1A1P02452 1464 aaPredicted RBP15.97■□□□□ 0.15
HMGB1-202ENST00000339872 KLRK1P26718 216 aa15.97■□□□□ 0.15
HMGB1-202ENST00000339872 CRY2Q49AN0 593 aa15.97■□□□□ 0.15
HMGB1-202ENST00000339872 FAM84BQ96KN1 310 aaPredicted RBP15.97■□□□□ 0.15
HMGB1-202ENST00000339872 TCRBV5S4A2TA0A5A2 114 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 RPS6KB1P23443 525 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 MAGEB6Q8N7X4 407 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 FLAD1Q8NFF5 587 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 ANKRD31Q8N7Z5 1873 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 FOXP2O15409 715 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 SLC51AQ86UW1 340 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 INTS4Q96HW7 963 aaKnown RBP15.96■□□□□ 0.15
HMGB1-202ENST00000339872 TCEANC2Q96MN5 208 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 NEK1Q96PY6 1258 aa15.96■□□□□ 0.15
HMGB1-202ENST00000339872 NRXN2Q9P2S2 1712 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 A0A0G2JLW4 131 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 NLGN1Q8N2Q7 840 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 TNPO1Q92973 898 aaKnown RBP15.95■□□□□ 0.14
HMGB1-202ENST00000339872 ANKIB1Q9P2G1 1089 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 LRP2BPQ9P2M1 347 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 TTLL5Q6EMB2 1281 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 STOX1Q6ZVD7 989 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 RBM17Q96I25 401 aaKnown RBP15.95■□□□□ 0.14
HMGB1-202ENST00000339872 PNPLA7Q6ZV29 1317 aa15.95■□□□□ 0.14
HMGB1-202ENST00000339872 LARGE1O95461 756 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 AIDAQ96BJ3 306 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 ABCF2Q9UG63 623 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 CTNNA3Q9UI47 895 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 DENND2AQ9ULE3 1009 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 NUCB2P80303 420 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 FBXO33Q7Z6M2 555 aa15.94■□□□□ 0.14
HMGB1-202ENST00000339872 FGAP02671 866 aa15.93■□□□□ 0.14
HMGB1-202ENST00000339872 HIBADHP31937 336 aaKnown RBP15.93■□□□□ 0.14
HMGB1-202ENST00000339872 ANKRD1Q15327 319 aa15.93■□□□□ 0.14
HMGB1-202ENST00000339872 XDHP47989 1333 aa15.93■□□□□ 0.14
HMGB1-202ENST00000339872 PKP1Q13835 747 aa15.93■□□□□ 0.14
HMGB1-202ENST00000339872 EZH2Q15910 746 aaKnown RBP15.93■□□□□ 0.14
HMGB1-202ENST00000339872 IMMTQ16891 758 aaKnown RBP15.93■□□□□ 0.14
HMGB1-202ENST00000339872 ZSCAN31Q96LW9 406 aaPredicted RBP15.93■□□□□ 0.14
HMGB1-202ENST00000339872 E7EWF7 191 aa15.92■□□□□ 0.14
HMGB1-202ENST00000339872 SEMA3EO15041 775 aa15.92■□□□□ 0.14
HMGB1-202ENST00000339872 HAND2P61296 217 aa15.92■□□□□ 0.14
HMGB1-202ENST00000339872 EN1Q05925 392 aaPredicted RBP15.92■□□□□ 0.14
HMGB1-202ENST00000339872 MSL1Q68DK7 614 aa15.92■□□□□ 0.14
HMGB1-202ENST00000339872 ALDH8A1Q9H2A2 487 aaPredicted RBP15.92■□□□□ 0.14
HMGB1-202ENST00000339872 SH2B1Q9NRF2 756 aaPredicted RBP15.92■□□□□ 0.14
HMGB1-202ENST00000339872 TPCN1Q9ULQ1 816 aa15.92■□□□□ 0.14
HMGB1-202ENST00000339872 MBD4O95243 580 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 APPP05067 770 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 MMP10P09238 476 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 HMGB1P09429 215 aaKnown RBP15.91■□□□□ 0.14
HMGB1-202ENST00000339872 MCM4P33991 863 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 TOB2Q14106 344 aaPredicted RBP15.91■□□□□ 0.14
HMGB1-202ENST00000339872 TXNRD3Q86VQ6 643 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 RAI14Q9P0K7 980 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 LEMD3Q9Y2U8 911 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 IRS2Q9Y4H2 1338 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 HOXA10P31260 410 aaPredicted RBP15.91■□□□□ 0.14
HMGB1-202ENST00000339872 ME3Q16798 604 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 CCDC83Q8IWF9 413 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 STRBPQ96SI9 672 aaKnown RBP15.91■□□□□ 0.14
HMGB1-202ENST00000339872 ANO8Q9HCE9 1232 aaPredicted RBP15.91■□□□□ 0.14
HMGB1-202ENST00000339872 CACNA1SQ13698 1873 aa15.91■□□□□ 0.14
HMGB1-202ENST00000339872 KLRG2A4D1S0 409 aaPredicted RBP15.9■□□□□ 0.14
HMGB1-202ENST00000339872 GBP4Q96PP9 640 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 ARMT1Q9H993 441 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 PARP3Q9Y6F1 533 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 LRRC37AA6NMS7 1700 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 GPSM2P81274 684 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 Q6ZUG5 572 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 CAMKK2Q96RR4 588 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 CRAMP1Q96RY5 1269 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 BRIP1Q9BX63 1249 aa15.9■□□□□ 0.14
HMGB1-202ENST00000339872 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.9■□□□□ 0.14
HMGB1-202ENST00000339872 COL11A2P13942 1736 aaPredicted RBP15.9■□□□□ 0.14
HMGB1-202ENST00000339872 MAST2Q6P0Q8 1798 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 PDS5AQ29RF7 1337 aaKnown RBP15.89■□□□□ 0.13
HMGB1-202ENST00000339872 ZNF213O14771 459 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 BBOX1O75936 387 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 CYP7A1P22680 504 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 CHAF1AQ13111 956 aaPredicted RBP15.89■□□□□ 0.13
HMGB1-202ENST00000339872 DHX32Q7L7V1 743 aaKnown RBP15.89■□□□□ 0.13
HMGB1-202ENST00000339872 MIGA1Q8NAN2 632 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 LRRC2Q9BYS8 371 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 NSFL1CQ9UNZ2 370 aaKnown RBP15.89■□□□□ 0.13
HMGB1-202ENST00000339872 FGD1P98174 961 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 LCORLQ8N3X6 602 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 NECAB1Q8N987 351 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 CCDC88AQ3V6T2 1871 aa15.89■□□□□ 0.13
HMGB1-202ENST00000339872 QSER1Q2KHR3 1735 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 ST3GAL1Q11201 340 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 SLC15A2Q16348 729 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms