RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 GINS2Q9Y248 185 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 CSADQ9Y600 493 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 TOP1P11387 765 aaKnown RBP15.43■□□□□ 0.06
RFFL-201ENST00000315249 CCDC183Q5T5S1 534 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 HOMER2Q9NSB8 354 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 TTF2Q9UNY4 1162 aaKnown RBP15.43■□□□□ 0.06
RFFL-201ENST00000315249 SSFA2P28290 1259 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 MCM7P33993 719 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 FAM193AP78312 1265 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 APOBRQ0VD83 1088 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 MARCKSP29966 332 aaPredicted RBP15.43■□□□□ 0.06
RFFL-201ENST00000315249 RPS8P62241 208 aaKnown RBP15.43■□□□□ 0.06
RFFL-201ENST00000315249 TAF3Q5VWG9 929 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 PYM1Q9BRP8 204 aaKnown RBP15.43■□□□□ 0.06
RFFL-201ENST00000315249 TTC41PQ6P2S7 1318 aa15.43■□□□□ 0.06
RFFL-201ENST00000315249 KDM5AP29375 1690 aaKnown RBP15.42■□□□□ 0.06
RFFL-201ENST00000315249 CCDC102BQ68D86 513 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 FNBP4Q8N3X1 1017 aaPredicted RBP15.42■□□□□ 0.06
RFFL-201ENST00000315249 TGFBRAP1Q8WUH2 860 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 MYCLP12524 364 aaPredicted RBP15.42■□□□□ 0.06
RFFL-201ENST00000315249 CALML3P27482 149 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 IRX3P78415 501 aaPredicted RBP15.42■□□□□ 0.06
RFFL-201ENST00000315249 TAF12Q16514 161 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 SOS1Q07889 1333 aaPredicted RBP15.42■□□□□ 0.06
RFFL-201ENST00000315249 PLEKHG3A1L390 1219 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 TRIM47Q96LD4 638 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 ASAP1Q9ULH1 1129 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 CCDC129Q6ZRS4 1044 aa15.42■□□□□ 0.06
RFFL-201ENST00000315249 CCDC171Q6TFL3 1326 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 KRT2P35908 639 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 TNNI3KQ59H18 835 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 USPL1Q5W0Q7 1092 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 LPIN2Q92539 896 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 FPGT-TNNI3KV9GXZ4 949 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 CTAGE5O15320 804 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 ZRSR2Q15696 482 aaKnown RBP15.41■□□□□ 0.06
RFFL-201ENST00000315249 KANK3Q6NY19 840 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 MAPKAPK5Q8IW41 473 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 DCPSQ96C86 337 aaKnown RBP15.41■□□□□ 0.06
RFFL-201ENST00000315249 GNA11P29992 359 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 SYKP43405 635 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 B4E1Z4 1266 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 NOP56O00567 594 aaKnown RBP15.41■□□□□ 0.06
RFFL-201ENST00000315249 MFSD14BQ5SR56 506 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 BRDTQ58F21 947 aaPredicted RBP15.41■□□□□ 0.06
RFFL-201ENST00000315249 PARD3Q8TEW0 1356 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 FAM13AO94988 1023 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 KIAA0825Q8IV33 1275 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 DBNDD2Q9BQY9 259 aa15.41■□□□□ 0.06
RFFL-201ENST00000315249 CTSWP56202 376 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 USH1GQ495M9 461 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 USP19O94966 1318 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 KCNQ3O43525 872 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 NOP2P46087 812 aaKnown RBP15.4■□□□□ 0.06
RFFL-201ENST00000315249 SEPT12Q8IYM1 358 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 SUCLG2Q96I99 432 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 SCNN1DP51172 638 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 IQCEQ6IPM2 695 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 SULF1Q8IWU6 871 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 KRT13P13646 458 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 TTLL7Q6ZT98 887 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 NLGN1Q8N2Q7 840 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 USP40Q9NVE5 1235 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 NDUFB9Q9Y6M9 179 aa15.4■□□□□ 0.06
RFFL-201ENST00000315249 TCP10L2B9ZVM9 353 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 PRDM1O75626 825 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 CRKLP46109 303 aaKnown RBP15.39■□□□□ 0.05
RFFL-201ENST00000315249 PLIN2Q99541 437 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 ZSCAN16Q9H4T2 348 aaPredicted RBP15.39■□□□□ 0.05
RFFL-201ENST00000315249 NLRP1Q9C000 1473 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 SFPQP23246 707 aaKnown RBP eCLIP15.39■□□□□ 0.05
RFFL-201ENST00000315249 ASIC1P78348 528 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 CREB3L3Q68CJ9 461 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 FAM114A1Q8IWE2 563 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 GRPEL1Q9HAV7 217 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 METP08581 1390 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 MROH5Q6ZUA9 1318 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 CHMP2AO43633 222 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 PAGR1Q9BTK6 254 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 TMX1Q9H3N1 280 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 GOPCQ9HD26 462 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 ARHGEF12Q9NZN5 1544 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 GCKRQ14397 625 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 TEKT1Q969V4 418 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 KDM5DQ9BY66 1539 aa15.39■□□□□ 0.05
RFFL-201ENST00000315249 RLBP1P12271 317 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 TMX3Q96JJ7 454 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 CARD10Q9BWT7 1032 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 PRPF4BQ13523 1007 aaKnown RBP15.38■□□□□ 0.05
RFFL-201ENST00000315249 USP37Q86T82 979 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 USP48Q86UV5 1035 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 COMMD10Q9Y6G5 202 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 HECW2Q9P2P5 1572 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 HSP90AA4PQ58FG1 418 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 KRT79Q5XKE5 535 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 GADL1Q6ZQY3 521 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 CNKSR1Q969H4 720 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 KIFC2Q96AC6 838 aa15.38■□□□□ 0.05
RFFL-201ENST00000315249 EIF4A1P60842 406 aaKnown RBP15.38■□□□□ 0.05
RFFL-201ENST00000315249 RRAGBQ5VZM2 374 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms