RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 CALM2P0DP24 149 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 CALM3P0DP25 149 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 PTPN14Q15678 1187 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 LRRC24Q50LG9 513 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 DSCC1Q9BVC3 393 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 NCOA5Q9HCD5 579 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 PIK3C2BO00750 1634 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 F8W031 263 aaPredicted RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 DTNBO60941 627 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 LDHBP07195 334 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 TYRO3Q06418 890 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 FAM173BQ6P4H8 233 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 CNBD1Q8NA66 436 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 TMEM87BQ96K49 555 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 HAUS7Q99871 368 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZC3H12CQ9C0D7 883 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 ANO8Q9HCE9 1232 aaPredicted RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 BRD1O95696 1058 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 DNAJC25Q9H1X3 360 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 ANGEL1Q9UNK9 670 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 POLR1AO95602 1720 aaPredicted RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 RTL9Q8NET4 1388 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 CT47A1Q5JQC4 288 aaPredicted RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 TEX35Q5T0J7 233 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 PYM1Q9BRP8 204 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZKSCAN3Q9BRR0 538 aa13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 DBNLQ9UJU6 430 aaKnown RBP13.14□□□□□ -0.31
PCDHGC3-201ENST00000308177 SPATA31A3Q5VYP0 1347 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 KIF2AO00139 706 aaPredicted RBP13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 HIBADHP31937 336 aaKnown RBP13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 GSDMDP57764 484 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 ATL3Q6DD88 541 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 LUC7LQ9NQ29 371 aaKnown RBP13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 TFCP2L1Q9NZI6 479 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 IQGAP1P46940 1657 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 MAP3K15Q6ZN16 1313 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 BRINP3Q76B58 766 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 SEC62Q99442 399 aaKnown RBP13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 ACBD3Q9H3P7 528 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 SPATA5Q8NB90 893 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 FBXO3Q9UK99 471 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 TRIM75PA6NK02 468 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 CYP27B1O15528 508 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 ME3Q16798 604 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 ARHGAP29Q52LW3 1261 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 TMC6Q7Z403 805 aa13.13□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZNF532Q9HCE3 1301 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 POLA2Q14181 598 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 HSP90B2PQ58FF3 399 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 NOM1Q5C9Z4 860 aaKnown RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 GIGYF2Q6Y7W6 1299 aaKnown RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 CCDC148Q8NFR7 591 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 LMBRD1Q9NUN5 540 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 TLR7Q9NYK1 1049 aaKnown RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 PLCG2P16885 1265 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZNF771Q7L3S4 317 aaPredicted RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 LSG1Q9H089 658 aaKnown RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 ADGRB1O14514 1584 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZSWIM6Q9HCJ5 1215 aa13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZNF335Q9H4Z2 1342 aaPredicted RBP13.12□□□□□ -0.31
PCDHGC3-201ENST00000308177 E7EWF7 191 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZSCAN12O43309 604 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 SETD1BQ9UPS6 1966 aaKnown RBP13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 NCAPD2Q15021 1401 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 RASEFQ8IZ41 740 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 VSIG10Q8N0Z9 540 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 CABP5Q9NP86 173 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 PICALMQ13492 652 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 CALML4Q96GE6 196 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZBTB1Q9Y2K1 713 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 CD2BP2O95400 341 aaKnown RBP13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 HEATR3Q7Z4Q2 680 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 ADAMTS13Q76LX8 1427 aa13.11□□□□□ -0.31
PCDHGC3-201ENST00000308177 JAK2O60674 1132 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 KIF18AQ8NI77 898 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 MAP4K1Q92918 833 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 CUL5Q93034 780 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 RUFY1Q96T51 708 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 PUS3Q9BZE2 481 aaKnown RBP13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 RIMBP3CA6NJZ7 1639 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 RIMBP3BA6NNM3 1639 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 RIMBP3Q9UFD9 1639 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 LOC102724428A0A0B4J2F2 783 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 SIK1P57059 783 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 CCDC24Q8N4L8 307 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 TRMT1Q9NXH9 659 aaKnown RBP13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 ZC3H13Q5T200 1668 aaKnown RBP13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 CALML3P27482 149 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 AMPD3Q01432 767 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 TXLNBQ8N3L3 684 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 C16orf45Q96MC5 204 aaPredicted RBP13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 GPR108Q9NPR9 543 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 AFMP43652 599 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 CDC37L1Q7L3B6 337 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 GREM2Q9H772 168 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 USP21Q9UK80 565 aa13.1□□□□□ -0.31
PCDHGC3-201ENST00000308177 HSPD1P10809 573 aaKnown RBP13.09□□□□□ -0.31
PCDHGC3-201ENST00000308177 TNNT1P13805 278 aa13.09□□□□□ -0.31
PCDHGC3-201ENST00000308177 IDEP14735 1019 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms