RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 MCMDC2Q4G0Z9 681 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 CAVIN4Q5BKX8 364 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 MCTP1Q6DN14 999 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 BRIP1Q9BX63 1249 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 PIM2Q9P1W9 311 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 PALD1Q9ULE6 856 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 EDC3Q96F86 508 aaKnown RBP20.02■□□□□ 0.8
CPSF4-201ENST00000292476 ZDHHC9Q9Y397 364 aa20.02■□□□□ 0.8
CPSF4-201ENST00000292476 COL11A2P13942 1736 aaPredicted RBP20.02■□□□□ 0.8
CPSF4-201ENST00000292476 DLEC1Q9Y238 1755 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 H0YIN7 160 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 RNF113AO15541 343 aaKnown RBP20.01■□□□□ 0.79
CPSF4-201ENST00000292476 PDE6BP35913 854 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 KCNJ4P48050 445 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 TMC4Q7Z404 712 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 FAM227BQ96M60 508 aa20.01■□□□□ 0.79
CPSF4-201ENST00000292476 KLRG2A4D1S0 409 aaPredicted RBP20■□□□□ 0.79
CPSF4-201ENST00000292476 GRIN3BO60391 1043 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 BRD1O95696 1058 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 GAS2L3Q86XJ1 694 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 CCDC171Q6TFL3 1326 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 MED23Q9ULK4 1368 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 A0A0D9SFI3 127 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 BBOX1O75936 387 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 HOXA10P31260 410 aaPredicted RBP20■□□□□ 0.79
CPSF4-201ENST00000292476 MCAMP43121 646 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 ZAP70P43403 619 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 PHKA1P46020 1223 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 PKP1Q13835 747 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 RNF20Q5VTR2 975 aa20■□□□□ 0.79
CPSF4-201ENST00000292476 ZKSCAN1P17029 563 aaPredicted RBP19.99■□□□□ 0.79
CPSF4-201ENST00000292476 DALRD3Q5D0E6 543 aaKnown RBP19.99■□□□□ 0.79
CPSF4-201ENST00000292476 MAP4K1Q92918 833 aa19.99■□□□□ 0.79
CPSF4-201ENST00000292476 ZNF622Q969S3 477 aaKnown RBP eCLIP19.99■□□□□ 0.79
CPSF4-201ENST00000292476 CRAMP1Q96RY5 1269 aa19.99■□□□□ 0.79
CPSF4-201ENST00000292476 IL25Q9H293 177 aa19.99■□□□□ 0.79
CPSF4-201ENST00000292476 NDUFB9Q9Y6M9 179 aa19.99■□□□□ 0.79
CPSF4-201ENST00000292476 CHD4Q14839 1912 aa19.99■□□□□ 0.79
CPSF4-201ENST00000292476 TNRC6CQ9HCJ0 1690 aaKnown RBP19.98■□□□□ 0.79
CPSF4-201ENST00000292476 SEMA3EO15041 775 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 ZBTB22O15209 634 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 MBD3O95983 291 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 ZMYM1Q5SVZ6 1142 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 VPS37DQ86XT2 251 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 SPATA5Q8NB90 893 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 LEMD3Q9Y2U8 911 aa19.98■□□□□ 0.79
CPSF4-201ENST00000292476 SCARF1Q14162 830 aa19.97■□□□□ 0.79
CPSF4-201ENST00000292476 CACNA1SQ13698 1873 aa19.97■□□□□ 0.79
CPSF4-201ENST00000292476 ARFGEF1Q9Y6D6 1849 aa19.97■□□□□ 0.79
CPSF4-201ENST00000292476 HMG20BQ9P0W2 317 aa19.97■□□□□ 0.79
CPSF4-201ENST00000292476 ZNF804BA4D1E1 1349 aa19.96■□□□□ 0.79
CPSF4-201ENST00000292476 CCDC173Q0VFZ6 552 aa19.96■□□□□ 0.79
CPSF4-201ENST00000292476 XDHP47989 1333 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 SRGNP10124 158 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 YY1P25490 414 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 BCAMP50895 628 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 MAP3K12Q12852 859 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 TTLL6Q8N841 843 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 APPBP2Q92624 585 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 KCNB2Q92953 911 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 RRAGDQ9NQL2 400 aaPredicted RBP19.95■□□□□ 0.78
CPSF4-201ENST00000292476 DENND2AQ9ULE3 1009 aa19.95■□□□□ 0.78
CPSF4-201ENST00000292476 U3KPZ7 1027 aaPredicted RBP19.95■□□□□ 0.78
CPSF4-201ENST00000292476 IGSF3O75054 1194 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 ALDH1B1P30837 517 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 PTH1RQ03431 593 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 RASGRF1Q13972 1273 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 NECTIN1Q15223 517 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 UBE3CQ15386 1083 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 ZSCAN23Q3MJ62 389 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 TTC14Q96N46 770 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 PPP1R9BQ96SB3 815 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 DSCC1Q9BVC3 393 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 ANKIB1Q9P2G1 1089 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 RBM8AQ9Y5S9 174 aaKnown RBP19.94■□□□□ 0.78
CPSF4-201ENST00000292476 SNX14Q9Y5W7 946 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 PDS5AQ29RF7 1337 aaKnown RBP19.94■□□□□ 0.78
CPSF4-201ENST00000292476 NPR1P16066 1061 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 CLCN1P35523 988 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 WASHC4Q2M389 1173 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 ARHGAP27Q6ZUM4 889 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 ANP32BQ92688 251 aaKnown RBP19.94■□□□□ 0.78
CPSF4-201ENST00000292476 TM6SF1Q9BZW5 370 aa19.94■□□□□ 0.78
CPSF4-201ENST00000292476 WDR33Q9C0J8 1336 aaKnown RBP19.93■□□□□ 0.78
CPSF4-201ENST00000292476 PSMA5P28066 241 aa19.93■□□□□ 0.78
CPSF4-201ENST00000292476 NASPP49321 788 aaPredicted RBP19.93■□□□□ 0.78
CPSF4-201ENST00000292476 TMED8Q6PL24 325 aaPredicted RBP19.93■□□□□ 0.78
CPSF4-201ENST00000292476 FBXO33Q7Z6M2 555 aa19.93■□□□□ 0.78
CPSF4-201ENST00000292476 MASTLQ96GX5 879 aa19.93■□□□□ 0.78
CPSF4-201ENST00000292476 TMX4Q9H1E5 349 aaPredicted RBP19.93■□□□□ 0.78
CPSF4-201ENST00000292476 ZNF219Q9P2Y4 722 aaPredicted RBP19.93■□□□□ 0.78
CPSF4-201ENST00000292476 AKAP11Q9UKA4 1901 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 A0A1B0GUL6 1792 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 SNAP23O00161 211 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 PRPF40AO75400 957 aaKnown RBP19.92■□□□□ 0.78
CPSF4-201ENST00000292476 ATP2B4P23634 1241 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 HIBADHP31937 336 aaKnown RBP19.92■□□□□ 0.78
CPSF4-201ENST00000292476 ADD2P35612 726 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 KRT32Q14532 448 aa19.92■□□□□ 0.78
CPSF4-201ENST00000292476 SLC9C2Q5TAH2 1124 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms