RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 SETDB2Q96T68 719 aa15.25■□□□□ 0.03
C9orf3-201ENST00000277198 EPHA10Q5JZY3 1008 aa15.25■□□□□ 0.03
C9orf3-201ENST00000277198 NIP7Q9Y221 180 aaKnown RBP eCLIP15.25■□□□□ 0.03
C9orf3-201ENST00000277198 TCHHQ07283 1943 aa15.25■□□□□ 0.03
C9orf3-201ENST00000277198 BRCA1P38398 1863 aaKnown RBP15.25■□□□□ 0.03
C9orf3-201ENST00000277198 MAP3K15Q6ZN16 1313 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 HMGB1P09429 215 aaKnown RBP15.24■□□□□ 0.03
C9orf3-201ENST00000277198 GPTP24298 496 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 GIMAP6Q6P9H5 292 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 TTC6Q86TZ1 520 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 HAUS7Q99871 368 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 DBNLQ9UJU6 430 aaKnown RBP15.24■□□□□ 0.03
C9orf3-201ENST00000277198 ANKRD31Q8N7Z5 1873 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 GRIN3BO60391 1043 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 MAP3K11Q16584 847 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 CLEC4GQ6UXB4 293 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 CDC37L1Q7L3B6 337 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 ZNF589Q86UQ0 364 aaPredicted RBP15.24■□□□□ 0.03
C9orf3-201ENST00000277198 CNBD1Q8NA66 436 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 PRIMPOLQ96LW4 560 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 NEK1Q96PY6 1258 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 GPR108Q9NPR9 543 aa15.24■□□□□ 0.03
C9orf3-201ENST00000277198 DDX19AQ9NUU7 478 aaKnown RBP15.24■□□□□ 0.03
C9orf3-201ENST00000277198 UBN2Q6ZU65 1347 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 GOLGA6L6A8MZA4 724 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 HMGN5P82970 282 aaKnown RBP15.23■□□□□ 0.03
C9orf3-201ENST00000277198 MCMDC2Q4G0Z9 681 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 C2CD5Q86YS7 1000 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 PLBD2Q8NHP8 589 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 FAM200AQ8TCP9 573 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 GTF3C6Q969F1 213 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 CHMP4CQ96CF2 233 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 LLPHQ9BRT6 129 aaKnown RBP15.23■□□□□ 0.03
C9orf3-201ENST00000277198 NUP62CLQ9H1M0 184 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 ZSCAN16Q9H4T2 348 aaPredicted RBP15.23■□□□□ 0.03
C9orf3-201ENST00000277198 SPTLC3Q9NUV7 552 aa15.23■□□□□ 0.03
C9orf3-201ENST00000277198 UQCRHLA0A096LP55 91 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 CAVIN2O95810 425 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 UQCRHP07919 91 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 KIF6Q6ZMV9 814 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 RBM43Q6ZSC3 357 aaKnown RBP15.22■□□□□ 0.03
C9orf3-201ENST00000277198 NBPF5PQ86XG9 351 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-201ENST00000277198 KLHDC4Q8TBB5 520 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 ZNF652Q9Y2D9 606 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 SH3TC1Q8TE82 1336 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 CHD4Q14839 1912 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 COL11A2P13942 1736 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-201ENST00000277198 GOLGA6L4A6NEF3 574 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 TFCP2Q12800 502 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 NOLC1Q14978 699 aaKnown RBP eCLIP15.22■□□□□ 0.03
C9orf3-201ENST00000277198 ZNF784Q8NCA9 323 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-201ENST00000277198 PIM2Q9P1W9 311 aa15.22■□□□□ 0.03
C9orf3-201ENST00000277198 NPHP1O15259 732 aa15.21■□□□□ 0.03
C9orf3-201ENST00000277198 CASP7P55210 303 aa15.21■□□□□ 0.03
C9orf3-201ENST00000277198 SPATA32Q96LK8 384 aa15.21■□□□□ 0.03
C9orf3-201ENST00000277198 ABCC12Q96J65 1359 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 ERVV-1B6SEH8 477 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 DALRD3Q5D0E6 543 aaKnown RBP15.2■□□□□ 0.02
C9orf3-201ENST00000277198 KBTBD3Q8NAB2 608 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 HELLSQ9NRZ9 838 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 UBE3BQ7Z3V4 1068 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 LEO1Q8WVC0 666 aaPredicted RBP15.2■□□□□ 0.02
C9orf3-201ENST00000277198 BRIP1Q9BX63 1249 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 CFAP45Q9UL16 551 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 KIF3AQ9Y496 699 aa15.2■□□□□ 0.02
C9orf3-201ENST00000277198 NUP98P52948 1817 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 H7C1W4 665 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 ATL3Q6DD88 541 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 ARHGAP27Q6ZUM4 889 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 DSCC1Q9BVC3 393 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 TNMDQ9H2S6 317 aa15.19■□□□□ 0.02
C9orf3-201ENST00000277198 TYRO3Q06418 890 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 SUSD4Q5VX71 490 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 GIGYF2Q6Y7W6 1299 aaKnown RBP15.18■□□□□ 0.02
C9orf3-201ENST00000277198 MYRIPQ8NFW9 859 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 SMARCC2Q8TAQ2 1214 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 ZNF622Q969S3 477 aaKnown RBP eCLIP15.18■□□□□ 0.02
C9orf3-201ENST00000277198 CLSTN2Q9H4D0 955 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 ZNF219Q9P2Y4 722 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-201ENST00000277198 TAF6LQ9Y6J9 622 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 ZNF609O15014 1411 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 H0YIN7 160 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 CYP21A2P08686 494 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 ST5P78524 1137 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 NAA16Q6N069 864 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-201ENST00000277198 FERMT3Q86UX7 667 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 DBNDD2Q9BQY9 259 aa15.18■□□□□ 0.02
C9orf3-201ENST00000277198 TNRC6CQ9HCJ0 1690 aaKnown RBP15.17■□□□□ 0.02
C9orf3-201ENST00000277198 PFKFB2O60825 505 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 LIG1P18858 919 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 GTF2F1P35269 517 aaKnown RBP eCLIP15.17■□□□□ 0.02
C9orf3-201ENST00000277198 IL15P40933 162 aaPredicted RBP15.17■□□□□ 0.02
C9orf3-201ENST00000277198 ERFEQ4G0M1 354 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 Q6ZUG5 572 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 DHX32Q7L7V1 743 aaKnown RBP15.17■□□□□ 0.02
C9orf3-201ENST00000277198 SLC51AQ86UW1 340 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 ZNF34Q8IZ26 560 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 TCEANC2Q96MN5 208 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 AGXT2Q9BYV1 514 aa15.17■□□□□ 0.02
C9orf3-201ENST00000277198 TTC12Q9H892 705 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms