RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 POLR3DP05423 398 aaPredicted RBP11.78□□□□□ -0.52
LIG3-201ENST00000262327 TPM3P06753 285 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 TSGA10IPQ3SY00 556 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 MEX3CQ5U5Q3 659 aaKnown RBP11.78□□□□□ -0.52
LIG3-201ENST00000262327 TTLL7Q6ZT98 887 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 HAUS7Q99871 368 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 ZBTB3Q9H5J0 574 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 UBR2Q8IWV8 1755 aa11.77□□□□□ -0.52
LIG3-201ENST00000262327 A0A1B0GVL5 298 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 FKBP4Q02790 459 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIG3-201ENST00000262327 ISM2Q6H9L7 571 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 FSIP1Q8NA03 581 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 PUS3Q9BZE2 481 aaKnown RBP11.77□□□□□ -0.53
LIG3-201ENST00000262327 CFAP45Q9UL16 551 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 KIF20AO95235 890 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 RBM43Q6ZSC3 357 aaKnown RBP11.77□□□□□ -0.53
LIG3-201ENST00000262327 DHX32Q7L7V1 743 aaKnown RBP11.77□□□□□ -0.53
LIG3-201ENST00000262327 LRP10Q7Z4F1 713 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 KBTBD3Q8NAB2 608 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 PAG1Q9NWQ8 432 aa11.77□□□□□ -0.53
LIG3-201ENST00000262327 E7EWF7 191 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 BIN1O00499 593 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 NPHP1O15259 732 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 IQCB1Q15051 598 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 ALDH8A1Q9H2A2 487 aaPredicted RBP11.76□□□□□ -0.53
LIG3-201ENST00000262327 KCPQ6ZWJ8 1503 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 PFKFB2O60825 505 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 CCDC73Q6ZRK6 1079 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 AOPEPQ8N6M6 819 aa11.76□□□□□ -0.53
LIG3-201ENST00000262327 ZFP91Q96JP5 570 aaPredicted RBP11.76□□□□□ -0.53
LIG3-201ENST00000262327 ZBTB22O15209 634 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 KINO60870 393 aaKnown RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 HSPD1P10809 573 aaKnown RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 NCBP1Q09161 790 aaKnown RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 SNW1Q13573 536 aaKnown RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 ILDR1Q86SU0 546 aaPredicted RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 GLI3P10071 1580 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 C5P01031 1676 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 BCL9O00512 1426 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 A1BGP04217 495 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 SMARCC2Q8TAQ2 1214 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 ZSCAN16Q9H4T2 348 aaPredicted RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 LAMB4A4D0S4 1761 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 M0R2C6 588 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 ATG9AQ7Z3C6 839 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 PIGBQ92521 554 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 SDF4Q9BRK5 362 aa11.75□□□□□ -0.53
LIG3-201ENST00000262327 GTPBP4Q9BZE4 634 aaKnown RBP11.75□□□□□ -0.53
LIG3-201ENST00000262327 IFIT1P09914 478 aaKnown RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 PDIA3P30101 505 aaKnown RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 PTPN21Q16825 1174 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 WASHC4Q2M389 1173 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 PI16Q6UXB8 463 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 LRRC8AQ8IWT6 810 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 NBPF26B4DH59 902 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 SKILP12757 684 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 FOXO4P98177 505 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 STX1AQ16623 288 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 RABL6Q3YEC7 729 aaPredicted RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 NBPF14Q5TI25 921 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 NBPF10Q6P3W6 841 aaKnown RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 NBPF15Q8N660 670 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 MARCH10Q8NA82 808 aaPredicted RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 TEX13AQ9BXU3 409 aaPredicted RBP11.74□□□□□ -0.53
LIG3-201ENST00000262327 RCOR1Q9UKL0 485 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 CLIC4Q9Y696 253 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 MAST3O60307 1309 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 AFF2P51816 1311 aa11.74□□□□□ -0.53
LIG3-201ENST00000262327 ITGB4P16144 1822 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 ATRNO75882 1429 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 FAM98CQ17RN3 349 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 DHX40Q8IX18 779 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 CCDC112Q8NEF3 446 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 OSBP2Q969R2 916 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 DENND2AQ9ULE3 1009 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 PCDHA7Q9UN72 937 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 CCDC69A6NI79 296 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 FDPSP14324 419 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 RXRAP19793 462 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 ADORA1P30542 326 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 CASP7P55210 303 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 SF3A1Q15459 793 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 CEP135Q66GS9 1140 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 ATG3Q9NT62 314 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 A0A1B0GUL7 405 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 CTIFO43310 598 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 NDUFA8P51970 172 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
LIG3-201ENST00000262327 ANKRD7Q92527 254 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 THSD7AQ9UPZ6 1657 aa11.73□□□□□ -0.53
LIG3-201ENST00000262327 GORABQ5T7V8 394 aa11.72□□□□□ -0.53
LIG3-201ENST00000262327 TRPC5Q9UL62 973 aaPredicted RBP11.72□□□□□ -0.53
LIG3-201ENST00000262327 DPCR1Q3MIW9 517 aa11.72□□□□□ -0.53
LIG3-201ENST00000262327 ZMYM1Q5SVZ6 1142 aa11.72□□□□□ -0.53
LIG3-201ENST00000262327 ENGASEQ8NFI3 743 aa11.72□□□□□ -0.53
LIG3-201ENST00000262327 GJD4Q96KN9 370 aaPredicted RBP11.72□□□□□ -0.53
LIG3-201ENST00000262327 SMTNL1A8MU46 457 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 FAM160A1Q05DH4 1040 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 MAPK8IP2Q13387 824 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 SCARF1Q14162 830 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms