RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ZFYVE9O95405 1425 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 PABPN1LA6NDY0 278 aaKnown RBP15.36■□□□□ 0.05
SF3A1-201ENST00000215793 IRS4O14654 1257 aaPredicted RBP15.36■□□□□ 0.05
SF3A1-201ENST00000215793 IVLP07476 585 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 APOBRQ0VD83 1088 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 HSPA4P34932 840 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 DTHD1Q6ZMT9 781 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 FMNL3Q8IVF7 1028 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 SIRT1Q96EB6 747 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 NPATQ14207 1427 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 PICALMQ13492 652 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 CWF19L2Q2TBE0 894 aaKnown RBP15.35■□□□□ 0.05
SF3A1-201ENST00000215793 TSPYL6Q8N831 410 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 NEK11Q8NG66 645 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 TCHPQ9BT92 498 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 ANKRD2Q9GZV1 360 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 SBNO2Q9Y2G9 1366 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 MRVI1Q9Y6F6 885 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 URB2Q14146 1524 aaKnown RBP15.35■□□□□ 0.05
SF3A1-201ENST00000215793 F8W031 263 aaPredicted RBP15.35■□□□□ 0.05
SF3A1-201ENST00000215793 TNNI2P48788 182 aa15.35■□□□□ 0.05
SF3A1-201ENST00000215793 RLBP1P12271 317 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 RIMS2Q9UQ26 1411 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 PPP1R2P41236 205 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 TFCP2Q12800 502 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 NAP1L4Q99733 375 aaKnown RBP15.34■□□□□ 0.05
SF3A1-201ENST00000215793 DDX21Q9NR30 783 aaKnown RBP eCLIP15.34■□□□□ 0.05
SF3A1-201ENST00000215793 RBM28Q9NW13 759 aaKnown RBP15.34■□□□□ 0.05
SF3A1-201ENST00000215793 LUC7L2Q9Y383 392 aaKnown RBP15.34■□□□□ 0.05
SF3A1-201ENST00000215793 A2MP01023 1474 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 TRERF1Q96PN7 1200 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 HELLSQ9NRZ9 838 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 FAM13AO94988 1023 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 PAXIP1Q6ZW49 1069 aaPredicted RBP15.34■□□□□ 0.05
SF3A1-201ENST00000215793 MAGEB6Q8N7X4 407 aa15.34■□□□□ 0.05
SF3A1-201ENST00000215793 TTC14Q96N46 770 aa15.33■□□□□ 0.05
SF3A1-201ENST00000215793 UBXN1Q04323 297 aa15.33■□□□□ 0.05
SF3A1-201ENST00000215793 CNGA4Q8IV77 575 aa15.33■□□□□ 0.05
SF3A1-201ENST00000215793 USP26Q9BXU7 913 aa15.33■□□□□ 0.05
SF3A1-201ENST00000215793 THOC2Q8NI27 1593 aaKnown RBP15.33■□□□□ 0.04
SF3A1-201ENST00000215793 ACSBG1Q96GR2 724 aa15.33■□□□□ 0.04
SF3A1-201ENST00000215793 EYA1Q99502 592 aa15.33■□□□□ 0.04
SF3A1-201ENST00000215793 GRIPAP1Q4V328 841 aa15.33■□□□□ 0.04
SF3A1-201ENST00000215793 BABAM1Q9NWV8 329 aa15.33■□□□□ 0.04
SF3A1-201ENST00000215793 SSX2IPQ9Y2D8 614 aa15.33■□□□□ 0.04
SF3A1-201ENST00000215793 KIF4AO95239 1232 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 ARFGAP2Q8N6H7 521 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 LRRC59Q96AG4 307 aaKnown RBP15.32■□□□□ 0.04
SF3A1-201ENST00000215793 LDHBP07195 334 aaKnown RBP15.32■□□□□ 0.04
SF3A1-201ENST00000215793 CHST3Q7LGC8 479 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 NSFL1CQ9UNZ2 370 aaKnown RBP15.32■□□□□ 0.04
SF3A1-201ENST00000215793 RPL13P26373 211 aaKnown RBP15.32■□□□□ 0.04
SF3A1-201ENST00000215793 MYL5Q02045 173 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 RILPL1Q5EBL4 403 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 TICAM2Q86XR7 235 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 ATRIPQ8WXE1 791 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 TESK2Q96S53 571 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 IFNKQ9P0W0 207 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 ARID5AQ03989 594 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 TTC6Q86TZ1 520 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 MIGA1Q8NAN2 632 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 TIGD1Q96MW7 591 aa15.32■□□□□ 0.04
SF3A1-201ENST00000215793 TOM1O60784 492 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 MCM7P33993 719 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 VAV2P52735 878 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 STX17P56962 302 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 RTCBQ9Y3I0 505 aaKnown RBP15.31■□□□□ 0.04
SF3A1-201ENST00000215793 ELP1O95163 1332 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 GCP02774 474 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 FAM160A1Q05DH4 1040 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 MSANTD4Q8NCY6 345 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 PHACTR3Q96KR7 559 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 ZRANB1Q9UGI0 708 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 NCBP1Q09161 790 aaKnown RBP15.31■□□□□ 0.04
SF3A1-201ENST00000215793 HELBQ8NG08 1087 aaPredicted RBP15.31■□□□□ 0.04
SF3A1-201ENST00000215793 EYA3Q99504 573 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 C19orf44Q9H6X5 657 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 GUCA1BQ9UMX6 200 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 RGS22Q8NE09 1264 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 TNNQ9UQP3 1299 aa15.31■□□□□ 0.04
SF3A1-201ENST00000215793 TMEM87BQ96K49 555 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 BICC1Q9H694 974 aaKnown RBP15.3■□□□□ 0.04
SF3A1-201ENST00000215793 HOXB7P09629 217 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 CEP83Q9Y592 693 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 MNAT1P51948 309 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 PLCB3Q01970 1234 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 ANKS4BQ8N8V4 417 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 RNMTO43148 476 aaKnown RBP15.3■□□□□ 0.04
SF3A1-201ENST00000215793 EEF2P13639 858 aaKnown RBP15.3■□□□□ 0.04
SF3A1-201ENST00000215793 PLCD1P51178 756 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 KRT24Q2M2I5 525 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 GSTA5Q7RTV2 222 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 DENND2AQ9ULE3 1009 aa15.3■□□□□ 0.04
SF3A1-201ENST00000215793 ZBTB7BO15156 539 aaPredicted RBP15.29■□□□□ 0.04
SF3A1-201ENST00000215793 MAPK8IP2Q13387 824 aaPredicted RBP15.29■□□□□ 0.04
SF3A1-201ENST00000215793 CCDC129Q6ZRS4 1044 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 IP6K1Q92551 441 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 TNNC1P63316 161 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 ATP6V0A2Q9Y487 856 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 EYA2O00167 538 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms