RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 NICN1Q9BSH3 213 aa10.9□□□□□ -0.66
GTF3A-209ENST00000640289 ING3Q9NXR8 418 aa10.9□□□□□ -0.66
GTF3A-209ENST00000640289 SCOCQ9UIL1 159 aa10.9□□□□□ -0.66
GTF3A-209ENST00000640289 MED13LQ71F56 2210 aa10.9□□□□□ -0.66
GTF3A-209ENST00000640289 TMEM272A0A1B0GTI8 110 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 A0A1W2PQ09 198 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 GABARAPO95166 117 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 CFPP27918 469 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 RPS19P39019 145 aaKnown RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 RPS27AP62979 156 aaKnown RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 PAX8Q06710 450 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 ATXN7L3Q14CW9 347 aaPredicted RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 PAN3Q58A45 887 aaKnown RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 FAM120AOSQ5T036 256 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 SFXN4Q6P4A7 337 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 C1orf229Q6ZS94 237 aaPredicted RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 GDPD3Q7L5L3 318 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 LINC00596Q86U02 117 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 FAM185AQ8N0U4 392 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 SUMF2Q8NBJ7 301 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 OR5D13Q8NGL4 314 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 C8orf46Q8TAG6 207 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 MRPS24Q96EL2 167 aaKnown RBP10.89□□□□□ -0.67
GTF3A-209ENST00000640289 TMEM59Q9BXS4 323 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 C7orf69Q9H7B7 122 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 LIN7BQ9HAP6 207 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 OPN4Q9UHM6 478 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 DAPK2Q9UIK4 370 aa10.89□□□□□ -0.67
GTF3A-209ENST00000640289 A0A0A6YYD4 124 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 MGST3O14880 152 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 LDLRAD4O15165 306 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 GATA3P23771 443 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 SERPINB10P48595 397 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 EFNB2P52799 333 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 ARF6P62330 175 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 RPL31P62899 125 aaKnown RBP10.88□□□□□ -0.67
GTF3A-209ENST00000640289 AESQ08117 197 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 ZNF273Q14593 569 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 CTF1Q16619 201 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 MPV17LQ2QL34 196 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 C11orf91Q3C1V1 193 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 SIGIRRQ6IA17 410 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 OR2W3Q7Z3T1 314 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 CLVS1Q8IUQ0 354 aaPredicted RBP10.88□□□□□ -0.67
GTF3A-209ENST00000640289 PPP1R35Q8TAP8 253 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 PLPPR1Q8TBJ4 325 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 COQ2Q96H96 371 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 DPCDQ9BVM2 203 aaPredicted RBP10.88□□□□□ -0.67
GTF3A-209ENST00000640289 LPAR5Q9H1C0 372 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 IFT22Q9H7X7 185 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 TMEM160Q9NX00 188 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 ONECUT1Q9UBC0 465 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 AUP1Q9Y679 476 aa10.88□□□□□ -0.67
GTF3A-209ENST00000640289 MALRD1Q5VYJ5 2156 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 ANK3Q12955 4377 aaKnown RBP10.87□□□□□ -0.67
GTF3A-209ENST00000640289 TRBV23-1A0A0A0MS06 115 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 J3QLI3 93 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 LIPFP07098 398 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 SNRPBP14678 240 aaKnown RBP10.87□□□□□ -0.67
GTF3A-209ENST00000640289 CCL3L1P16619 93 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 GLIPR1P48060 266 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 IDNKQ5T6J7 187 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 TMEM200BQ69YZ2 307 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 TCF23Q7RTU1 214 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 RTN4RL2Q86UN3 420 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 MRI1Q9BV20 369 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 TM2D1Q9BX74 207 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 SIRPDQ9H106 197 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 RCC2Q9P258 522 aaKnown RBP10.87□□□□□ -0.67
GTF3A-209ENST00000640289 ARHGAP32A7KAX9 2087 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 ABCA1O95477 2261 aa10.87□□□□□ -0.67
GTF3A-209ENST00000640289 CSPG4Q6UVK1 2322 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A10PA6NDY2 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A18PA6NE21 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A16PA6NEW6 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A20PA6NIJ5 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A8PA6NJQ4 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A7PA6NKC0 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A22PA8MWA6 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A12PA8MX19 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A5PA8MXJ8 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A23PA8MXZ1 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 PAHP00439 452 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 IL1AP01583 271 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 CSN2P05814 226 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A15PP0C7V4 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A13PP0C7W8 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A14PP0C7W9 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 FAM90A24PP0C7X0 464 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 MMP9P14780 707 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 ERP29P30040 261 aaKnown RBP10.86□□□□□ -0.67
GTF3A-209ENST00000640289 DLX1P56177 255 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 P2RX3P56373 397 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 ERVFRD-1P60508 538 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 PRB3Q04118 309 aaPredicted RBP10.86□□□□□ -0.67
GTF3A-209ENST00000640289 KRBOX4Q5JUW0 171 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 NKAPLQ5M9Q1 402 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 RAB12Q6IQ22 244 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 Q8N7P7 452 aa10.86□□□□□ -0.67
GTF3A-209ENST00000640289 NDNFQ8TB73 568 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms