RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 KALRNO60229 2985 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 OR5AC1P0C628 307 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 ZNF728P0DKX0 622 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 CALCRP30988 508 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 IAH1Q2TAA2 248 aaPredicted RBP9.1□□□□□ -0.95
CUX1-221ENST00000622516 NSUN5P2Q63ZY6 315 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 BEND4Q6ZU67 534 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 SGPP2Q8IWX5 399 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 PDZD9Q8IXQ8 264 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 RDH5Q92781 318 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 HIST1H2AAQ96QV6 131 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 NMES1Q9C002 83 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 RNF122Q9H9V4 155 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 RAB18Q9NP72 206 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 RYDENQ9NUL5 291 aaKnown RBP9.1□□□□□ -0.95
CUX1-221ENST00000622516 ZNF98A6NK75 572 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 AGFG2O95081 481 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 SCTP09683 121 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 ABCA11PQ4W5N1 156 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 RTN4IP1Q8WWV3 396 aaPredicted RBP9.1□□□□□ -0.95
CUX1-221ENST00000622516 OR2J1Q9GZK6 312 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 LUZP4Q9P127 313 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 MFSD2BA6NFX1 497 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 AADACP22760 399 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 IGHV1-2P23083 117 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 PPA1Q15181 289 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 TUSC1Q2TAM9 212 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 RTL6Q6ICC9 239 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 STPG2Q8N412 459 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 UBALD1Q8TB05 177 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 ZNF286AQ9HBT8 521 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 TRAPPC2LH3BP13 241 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 NDUFS6O75380 124 aaKnown RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 CA11O75493 328 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 DTYMKP23919 212 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 FOXF2Q12947 444 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 ZNF345Q14585 488 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 VWA1Q6PCB0 445 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 DHRS11Q6UWP2 260 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 C20orf204Q6ZNR8 217 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 LYZL2Q7Z4W2 148 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 MRPS24Q96EL2 167 aaKnown RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 C2orf50Q96LR7 162 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 MS4A7Q9GZW8 240 aaPredicted RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 SLC2A9Q9NRM0 540 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 IL36GQ9NZH8 169 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 LSM5Q9Y4Y9 91 aaKnown RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 CRYM-AS1A6NIL9 109 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 ANKRD30BLA7E2S9 258 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 RRP8O43159 456 aaKnown RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 DIRAS3O95661 229 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 CTSDP07339 412 aaPredicted RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 AKR1C2P52895 323 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 UBA52P62987 128 aaKnown RBP9.09□□□□□ -0.95
CUX1-221ENST00000622516 AKR1C1Q04828 323 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 GGNBP1Q5YKI7 109 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 OR2A2Q6IF42 318 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 POC1AQ8NBT0 407 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 C1orf123Q9NWV4 160 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 FZR1Q9UM11 496 aa9.09□□□□□ -0.95
CUX1-221ENST00000622516 SNAPC5O75971 98 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 CYCSP99999 105 aaKnown RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 MEX3BQ6ZN04 569 aaKnown RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 MKXQ8IYA7 352 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 SECTM1Q8WVN6 248 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 TMED6Q8WW62 240 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 OR5P3Q8WZ94 311 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 SMIM3Q9BZL3 60 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 SS18L1O75177 396 aaPredicted RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 CST4P01036 141 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 COX5BP10606 129 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 RCC1P18754 421 aaPredicted RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 FGF12P61328 243 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 SURF2Q15527 256 aaPredicted RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 SPIN3Q5JUX0 258 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 CXorf67Q86X51 503 aaPredicted RBP9.08□□□□□ -0.96
CUX1-221ENST00000622516 PRR18Q8N4B5 295 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 TECTBQ96PL2 329 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 RASL12Q9NYN1 266 aa9.08□□□□□ -0.96
CUX1-221ENST00000622516 SLC33A1O00400 549 aaPredicted RBP9.07□□□□□ -0.96
CUX1-221ENST00000622516 PHF1O43189 567 aaPredicted RBP9.07□□□□□ -0.96
CUX1-221ENST00000622516 UBE2NP61088 152 aaKnown RBP9.07□□□□□ -0.96
CUX1-221ENST00000622516 SNTB1Q13884 538 aaKnown RBP9.07□□□□□ -0.96
CUX1-221ENST00000622516 ZNF585AQ6P3V2 769 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 TFAP2EQ6VUC0 442 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 C9orf106Q8NAJ2 232 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 PIK3IP1Q96FE7 263 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 TNFSF12O43508 249 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 PPYP01298 95 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 PRSS54Q6PEW0 395 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 OR5A2Q8NGI9 324 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 GMPPAQ96IJ6 420 aaPredicted RBP9.07□□□□□ -0.96
CUX1-221ENST00000622516 TAAR6Q96RI8 345 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 NAA60Q9H7X0 242 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 PCDHB16Q9NRJ7 776 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 TINAGQ9UJW2 476 aa9.07□□□□□ -0.96
CUX1-221ENST00000622516 MEX3AA1L020 520 aaKnown RBP9.06□□□□□ -0.96
CUX1-221ENST00000622516 H0YL77 283 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 LRP3O75074 770 aa9.06□□□□□ -0.96
CUX1-221ENST00000622516 HOXD4P09016 255 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms