RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CREB3L1Q96BA8 519 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 ADAT3Q96EY9 351 aaPredicted RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 KIRREL1Q96J84 757 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CNN2Q99439 309 aaKnown RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 MNTQ99583 582 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 COMMD4Q9H0A8 199 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 PLSCR3Q9NRY6 295 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CLN6Q9NWW5 311 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 NDE1Q9NXR1 346 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 LCE6AA0A183 80 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 KBTBD11-OT1A0A1B0GTJ5 212 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 AQP12BA6NM10 295 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 ZNF729A6NN14 1252 aaPredicted RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 SERPINE3A8MV23 424 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 NPIPB11E5RHQ5 1161 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 J3QR06 171 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 M0R129 80 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 SIRPB1O00241 398 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 SLC33A1O00400 549 aaPredicted RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 SH2D1BO14796 132 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 SYT7O43581 403 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 KDM4BO94953 1096 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 RPP14O95059 124 aaKnown RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 RPLP1P05386 114 aaKnown RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRKACAP17612 351 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 ATF1P18846 271 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 ATP1B3P54709 279 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 GP2P55259 537 aaKnown RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 ACTR3P61158 418 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRR20EP86478 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRR20CP86479 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRR20DP86480 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRR20BP86481 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PRR20AP86496 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 CFHR3Q02985 330 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 FHL3Q13643 280 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 HNF4GQ14541 408 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 KPNB1Q14974 876 aaKnown RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 CDK5R1Q15078 307 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PNLIPRP3Q17RR3 467 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 ODF4Q2M2E3 257 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 DEFB136Q30KP8 78 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 SPIN3Q5JUX0 258 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 C9orf66Q5T8R8 295 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 ASPHD1Q5U4P2 390 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 NXNL2Q5VZ03 156 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 C12orf73Q69YU5 71 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 CCDC144NLQ6NUI1 221 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 LCNL1Q6ZST4 164 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 UTS2BQ765I0 119 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 TRAPPC6BQ86SZ2 158 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 SBSPONQ8IVN8 264 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 AQP12AQ8IXF9 295 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 DRAM1Q8N682 238 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 CCDC54Q8NEL0 328 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 OR56B4Q8NH76 319 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 OR9G1Q8NH87 305 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 C10orf35Q96D05 121 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 BORCS8Q96FH0 119 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 NSL1Q96IY1 281 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PPIL3Q9H2H8 161 aaKnown RBP4.78□□□□□ -1.64
VRK3-220ENST00000600259 GAL3ST2Q9H3Q3 398 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 NCOR1P1Q9H4R4 102 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 GTF2A1LQ9UNN4 478 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 PSG11Q9UQ72 335 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 STARD9Q9P2P6 4700 aa4.78□□□□□ -1.64
VRK3-220ENST00000600259 LOC107986453A0A1B0GWG9 222 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 A0A1W2PQL4 384 aaPredicted RBP4.77□□□□□ -1.65
VRK3-220ENST00000600259 FUOMA2VDF0 154 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 METTL15A6NJ78 407 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 ZAR1LA6NP61 321 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 NUDT19A8MXV4 375 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 ZNF670-ZNF695F2Z2N8 137 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 CCRL2O00421 344 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 TOR1AO14656 332 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 MITFO75030 526 aaPredicted RBP4.77□□□□□ -1.65
VRK3-220ENST00000600259 GATBO75879 557 aaKnown RBP4.77□□□□□ -1.65
VRK3-220ENST00000600259 SULT1C4O75897 302 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 SERPINA3P01011 423 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 IGHV3-7P01780 117 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 MT-ND2P03891 347 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 MNDAP41218 407 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 ECI1P42126 302 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 PTGFRP43088 359 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 POU3F4P49335 361 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 ARHGDIBP52566 201 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 SNU13P55769 128 aaKnown RBP4.77□□□□□ -1.65
VRK3-220ENST00000600259 MTCP1P56278 107 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 ZNF85Q03923 595 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 FOXE3Q13461 319 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 KRBOX4Q5JUW0 171 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 FDX2Q6P4F2 183 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 TEX38Q6PEX7 206 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 SLC35E3Q7Z769 313 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 OR8H3Q8N146 312 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 TCEANCQ8N8B7 351 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 YIPF7Q8N8F6 280 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 Q8N9W7 124 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 TMEM104Q8NE00 496 aa4.77□□□□□ -1.65
VRK3-220ENST00000600259 OR4D6Q8NGJ1 314 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms