RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 FAM90A8PA6NJQ4 464 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 ODF3BA8MYP8 253 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 H0YJX3 145 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 HSPB6O14558 160 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 MMP23AO75900 390 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 CLPXO76031 633 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 CDRT1O95170 752 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 HTR3BO95264 441 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 OR3A4PP47883 348 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 KRTAP10-3P60369 221 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 PPP3R1P63098 170 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 ATXN7L3Q14CW9 347 aaPredicted RBP12.69□□□□□ -0.38
VPS39-203ENST00000561797 RSU1Q15404 277 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 FAM189A2Q15884 450 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 KRBOX4Q5JUW0 171 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 DDI2Q5TDH0 399 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 ZNF626Q68DY1 528 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 SLC35E4Q6ICL7 350 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 BRICD5Q6PL45 260 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 CHST4Q8NCG5 386 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 ZNF485Q8NCK3 441 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 OR11H6Q8NGC7 330 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 ZNF696Q9H7X3 374 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 TMEM138Q9NPI0 162 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 PLCXD1Q9NUJ7 323 aa12.69□□□□□ -0.38
VPS39-203ENST00000561797 TBL2Q9Y4P3 447 aaKnown RBP12.69□□□□□ -0.38
VPS39-203ENST00000561797 TRBV5-5A0A0J9YX44 114 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 MYL12BO14950 172 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 ALDOBP05062 364 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 C21orf33P30042 268 aaPredicted RBP12.68□□□□□ -0.38
VPS39-203ENST00000561797 BDKRB2P30411 391 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 PTGFRP43088 359 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 RAB13P51153 203 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 SLC34A1Q06495 639 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 SSX2Q16385 188 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 PRR31Q5SQ13 230 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 LDLRAD2Q5SZI1 272 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 PRAMEF5Q5TYX0 476 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 ELP2Q6IA86 826 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 BAIAP2L2Q6UXY1 529 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 FBLIM1Q8WUP2 373 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 TFAP2CQ92754 450 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 MALSU1Q96EH3 234 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 COQ2Q96H96 371 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 CLEC7AQ9BXN2 247 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 TMEM133Q9H2Q1 129 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 GAL3ST2Q9H3Q3 398 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 C16orf95Q9H693 158 aa12.68□□□□□ -0.38
VPS39-203ENST00000561797 NBEAL1Q6ZS30 2694 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 IGHV2-26A0A0B4J1V2 119 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 A0A1W2PPK0 400 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 ODAMA1E959 279 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 FAM172BPA6NC97 362 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 TSPAN9O75954 239 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 CDK2P24941 298 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 ZNF93P35789 620 aaPredicted RBP12.67□□□□□ -0.38
VPS39-203ENST00000561797 PROK1P58294 105 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 RPS11P62280 158 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS39-203ENST00000561797 RIPK1Q13546 671 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 AANATQ16613 207 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 PIGYQ3MUY2 71 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 Q499Y3 187 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 PAN3Q58A45 887 aaKnown RBP12.67□□□□□ -0.38
VPS39-203ENST00000561797 YIF1BQ5BJH7 314 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 ASCL4Q6XD76 172 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 NDNFQ8TB73 568 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 PIFOQ8TCI5 191 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 CORO2AQ92828 525 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 FOXRED1Q96CU9 486 aaPredicted RBP12.67□□□□□ -0.38
VPS39-203ENST00000561797 PGLYRP3Q96LB9 341 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 S100A13Q99584 98 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 METTL9Q9H1A3 318 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 PPIL3Q9H2H8 161 aaKnown RBP12.67□□□□□ -0.38
VPS39-203ENST00000561797 TAS2R3Q9NYW6 316 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 HILPDAQ9Y5L2 63 aa12.67□□□□□ -0.38
VPS39-203ENST00000561797 TET2Q6N021 2002 aaPredicted RBP12.67□□□□□ -0.38
VPS39-203ENST00000561797 TRAV24A0A0B4J272 114 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 CSN2P05814 226 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 JUNBP17275 347 aaPredicted RBP12.66□□□□□ -0.38
VPS39-203ENST00000561797 IGFBP3P17936 291 aaPredicted RBP12.66□□□□□ -0.38
VPS39-203ENST00000561797 CELP19835 753 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 GDNFP39905 211 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 WNT4P56705 351 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 TAS2R43P59537 309 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 DOC2BQ14184 412 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 NANOGP1Q8N7R0 232 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 OR51T1Q8NGJ9 327 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 NRG4Q8WWG1 115 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 OR14A2Q96R54 314 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 ZNF184Q99676 751 aaPredicted RBP12.66□□□□□ -0.38
VPS39-203ENST00000561797 CITED1Q99966 193 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 ABCB10Q9NRK6 738 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 CKLFQ9UBR5 152 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 SIGLEC9Q9Y336 463 aa12.66□□□□□ -0.38
VPS39-203ENST00000561797 TRAV8-7A0A075B6U6 113 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 MAGEA13PA6NCF6 341 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 ERICH4A6NGS2 130 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 PTGES3LE9PB15 166 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 CHST1O43916 411 aa12.65□□□□□ -0.38
VPS39-203ENST00000561797 CSTBP04080 98 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms