RNA–Protein interactions for RNA: ENST00000560297.5

USP8-209, Transcript of ubiquitin specific peptidase 8, human

TSL 5

Gene USP8, Length 652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP8-209	ENST00000560297	NEDD4L	Q96PU5	975 aa		10.18	□□□□□ -0.78
USP8-209	ENST00000560297	SHARPIN	Q9H0F6	387 aa		10.18	□□□□□ -0.78
USP8-209	ENST00000560297	RBM38	Q9H0Z9	239 aa	Known RBP	10.18	□□□□□ -0.78
USP8-209	ENST00000560297	LPAR5	Q9H1C0	372 aa		10.18	□□□□□ -0.78
USP8-209	ENST00000560297	SPATA2	Q9UM82	520 aa		10.18	□□□□□ -0.78
USP8-209	ENST00000560297	ITPR3	Q14573	2671 aa		10.18	□□□□□ -0.78
USP8-209	ENST00000560297	TRBV23-1	A0A0A0MS06	115 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297		A0A0B4J203	849 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	TRAV24	A0A0B4J272	114 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297		A0A1B0GW55	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	TMEM82	A0PJX8	343 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DPPA5	A6NC42	116 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	MCRIP1	C9JLW8	97 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	PSPN	O60542	156 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	SCGN	O76038	276 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	PAH	P00439	452 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	TGFA	P01135	160 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	CSN2	P05814	226 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L2	P0CJ85	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L3	P0CJ86	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L4	P0CJ87	422 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L5	P0CJ88	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L6	P0CJ89	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L7	P0CJ90	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	SELL	P14151	372 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	SNRPB	P14678	240 aa	Known RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	GATA3	P23771	443 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	ERP29	P30040	261 aa	Known RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	LCN2	P80188	198 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	RBM39	Q14498	530 aa	Known RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	SPCS2	Q15005	226 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	GRK1	Q15835	563 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	PAN3	Q58A45	887 aa	Known RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	ATAD3C	Q5T2N8	411 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	MZT2A	Q6P582	158 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4L9	Q6RFH8	374 aa	Predicted RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	BTN2A1	Q7KYR7	527 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	SUMF2	Q8NBJ7	301 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	RAB40A	Q8WXH6	277 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	TMEM186	Q96B77	213 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DPCD	Q9BVM2	203 aa	Predicted RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	BARHL1	Q9BZE3	327 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	RCC2	Q9P258	522 aa	Known RBP	10.17	□□□□□ -0.78
USP8-209	ENST00000560297	DUX4	Q9UBX2	424 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	PEX16	Q9Y5Y5	336 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	OTOG	Q6ZRI0	2925 aa		10.17	□□□□□ -0.78
USP8-209	ENST00000560297	KIR2DS1	A0A191URI9	304 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	ENSA	O43768	121 aa	Known RBP	10.16	□□□□□ -0.78
USP8-209	ENST00000560297	PDCD6	O75340	191 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	BLVRB	P30043	206 aa	Predicted RBP	10.16	□□□□□ -0.78
USP8-209	ENST00000560297	OR3A1	P47881	315 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	DVL1P1	P54792	670 aa	Predicted RBP	10.16	□□□□□ -0.78
USP8-209	ENST00000560297	PAX5	Q02548	391 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	SIGIRR	Q6IA17	410 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	RAB12	Q6IQ22	244 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	BTNL3	Q6UXE8	466 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	BIVM	Q86UB2	503 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	GLCCI1	Q86VQ1	547 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	OR4S1	Q8NGB4	309 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	C8orf46	Q8TAG6	207 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	LGALS14	Q8TCE9	139 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	DYNC2LI1	Q8TCX1	351 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	H1FX	Q92522	213 aa	Known RBP	10.16	□□□□□ -0.78
USP8-209	ENST00000560297	PHF21A	Q96BD5	680 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	CMTM3	Q96MX0	182 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	DCTN5	Q9BTE1	182 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	PPA2	Q9H2U2	334 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	KCNK15	Q9H427	330 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	NCOR1P1	Q9H4R4	102 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	LPAR2	Q9HBW0	351 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	BATF3	Q9NR55	127 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	PLEKHJ1	Q9NW61	149 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	LPAR3	Q9UBY5	353 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	RPUSD1	Q9UJJ7	312 aa	Known RBP	10.16	□□□□□ -0.78
USP8-209	ENST00000560297	HSF4	Q9ULV5	492 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	MED13L	Q71F56	2210 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297	MALRD1	Q5VYJ5	2156 aa		10.16	□□□□□ -0.78
USP8-209	ENST00000560297		A0A1W2PPH5	198 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	CD5L	O43866	347 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	CA11	O75493	328 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	FCN3	O75636	299 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	VEGFC	P49767	419 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	EFNB2	P52799	333 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	EDDM3B	P56851	147 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	RPL31	P62899	125 aa	Known RBP	10.15	□□□□□ -0.78
USP8-209	ENST00000560297	PAX2	Q02962	417 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	MEF2C	Q06413	473 aa	Predicted RBP	10.15	□□□□□ -0.78
USP8-209	ENST00000560297	ARL6IP1	Q15041	203 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297		Q6ZTK2	550 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	BPIFB2	Q8N4F0	458 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	LY6G5B	Q8NDX9	201 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	NEK7	Q8TDX7	302 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	NUDT16L1	Q9BRJ7	211 aa	Known RBP	10.15	□□□□□ -0.78
USP8-209	ENST00000560297	NICN1	Q9BSH3	213 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	CHST6	Q9GZX3	395 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	ATG5	Q9H1Y0	275 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	ABCG5	Q9H222	651 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	HIF1AN	Q9NWT6	349 aa		10.15	□□□□□ -0.78
USP8-209	ENST00000560297	RHBDL2	Q9NX52	303 aa		10.15	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms