RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RDH10Q8IZV5 341 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 SPERTQ8NA61 448 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 OR1M1Q8NGA1 313 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 OR6M1Q8NGM8 313 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 AKR7LQ8NHP1 331 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 OR51E1Q8TCB6 317 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 LINC00476Q8WZB0 136 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 BORCS5Q969J3 196 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 PTX4Q96A99 478 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 SGK3Q96BR1 496 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 FGGYQ96C11 551 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 S100A16Q96FQ6 103 aaKnown RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 REEP6Q96HR9 211 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 FAM71F1Q96KD3 344 aaPredicted RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 POM121L2Q96KW2 1035 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 SLC30A2Q9BRI3 323 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 DNAJC4Q9NNZ3 241 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 DIABLOQ9NR28 239 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 GSN-AS1Q9NRJ2 163 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 N6AMT1Q9Y5N5 214 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 MPC1Q9Y5U8 109 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 ZNF816-ZNF321PA0A0X1KG74 233 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 A0A1B0GTI1 187 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 A0A1W2PPK0 400 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ISPDA4D126 451 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 METTL21EPA6NDL7 271 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FABP12A6NFH5 140 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FAM25AB3EWG3 89 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FAM25CB3EWG5 89 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FAM25GB3EWG6 89 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 EEF1E1-BLOC1S5C9J1V9 151 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 SLC17A2O00624 439 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 PIN1P1O15428 100 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 EEF1E1O43324 174 aaKnown RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 SULT1B1O43704 296 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 CYB5AP00167 134 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 CST4P01036 141 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 NRASP01111 189 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 IGLV1-44P01699 117 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 MAS1P04201 325 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 HCKP08631 526 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 PATE4P0C8F1 98 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 CD37P11049 281 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 PSKH1P11801 424 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ARSBP15848 533 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ZNF14P17017 642 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 ATF1P18846 271 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 HTR2CP28335 458 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ZNF93P35789 620 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 NR4A2P43354 598 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 UQCRFS1P47985 274 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FUT6P51993 359 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ART1P52961 327 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ATP1B3P54709 279 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 DEFA1P59665 94 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 DEFA3P59666 94 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FOXF2Q12947 444 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 OR8B8Q15620 311 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 RAB11BQ15907 218 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ODF4Q2M2E3 257 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 RSPO1Q2MKA7 263 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 ZNF718Q3SXZ3 478 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 FBXL19-AS1Q494R0 122 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 MIDNQ504T8 468 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 HIKESHIQ53FT3 197 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 C1orf100Q5SVJ3 147 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 HACD4Q5VWC8 232 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 SUMO4Q6EEV6 95 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 PYHIN1Q6K0P9 492 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 C16orf87Q6PH81 154 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 MDP1Q86V88 176 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 GDPD1Q8N9F7 314 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 WDR31Q8NA23 367 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 LILRB4Q8NHJ6 448 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 SPATA3Q8NHX4 192 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 MRPS24Q96EL2 167 aaKnown RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 BORCS8Q96FH0 119 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 DIRAS2Q96HU8 199 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 GPER1Q99527 375 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 URM1Q9BTM9 101 aaKnown RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 CCDC32Q9BV29 185 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 CHST5Q9GZS9 411 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 CST11Q9H112 138 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 OPN3Q9H1Y3 402 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 TMEM231Q9H6L2 316 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 RNF167Q9H6Y7 350 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 METTL17Q9H7H0 456 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 RHOFQ9HBH0 211 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 KCNJ16Q9NPI9 418 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ZNF224Q9NZL3 707 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 COMMD3Q9UBI1 195 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 DAPK2Q9UIK4 370 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 ERRFI1Q9UJM3 462 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 RAB22AQ9UL26 194 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 PIGLQ9Y2B2 252 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 AK6Q9Y3D8 172 aaKnown RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 SLC25A15Q9Y619 301 aa4.35□□□□□ -1.71
LDLR-209ENST00000558528 MAP1AP78559 2803 aaPredicted RBP4.35□□□□□ -1.71
LDLR-209ENST00000558528 HEATR5AQ86XA9 2040 aa4.34□□□□□ -1.71
LDLR-209ENST00000558528 hCG_38984A0A1B0GV85 526 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms