RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 GZMKP49863 264 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 LCN2P80188 198 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 GRK1Q15835 563 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 PAN3Q58A45 887 aaKnown RBP10.15□□□□□ -0.78
SHMT2-209ENST00000553949 ATAD3CQ5T2N8 411 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 FOXB2Q5VYV0 432 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 SIGIRRQ6IA17 410 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 OR8H2Q8N162 312 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 FAM89BQ8N5H3 189 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 SUMF2Q8NBJ7 301 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 OR4S1Q8NGB4 309 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 OR5D13Q8NGL4 314 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 DYNC2LI1Q8TCX1 351 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 KCTD12Q96CX2 325 aaKnown RBP10.15□□□□□ -0.78
SHMT2-209ENST00000553949 DGCR14Q96DF8 476 aaKnown RBP10.15□□□□□ -0.78
SHMT2-209ENST00000553949 DPCDQ9BVM2 203 aaPredicted RBP10.15□□□□□ -0.78
SHMT2-209ENST00000553949 SPACA1Q9HBV2 294 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 LPAR2Q9HBW0 351 aa10.15□□□□□ -0.78
SHMT2-209ENST00000553949 RCC2Q9P258 522 aaKnown RBP10.15□□□□□ -0.78
SHMT2-209ENST00000553949 LOC105371242A0A075B767 164 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 MGST3O14880 152 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 ECDO95905 644 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-209ENST00000553949 INHBBP09529 407 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 CD99P14209 185 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 FUT3P21217 361 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 SOX6P35712 828 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 VEGFCP49767 419 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 DYNC1I2Q13409 638 aaKnown RBP10.14□□□□□ -0.79
SHMT2-209ENST00000553949 FAM189A2Q15884 450 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 C11orf91Q3C1V1 193 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 NKAPLQ5M9Q1 402 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 CD276Q5ZPR3 534 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 CYB5R2Q6BCY4 276 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 RAB12Q6IQ22 244 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 BRICD5Q6PL45 260 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 BTN2A1Q7KYR7 527 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 BIVMQ86UB2 503 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 BPIFB2Q8N4F0 458 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 ACOT12Q8WYK0 555 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 AP3S1Q92572 193 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 MSI2Q96DH6 328 aaKnown RBP10.14□□□□□ -0.79
SHMT2-209ENST00000553949 PPA2Q9H2U2 334 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 CCDC59Q9P031 241 aaKnown RBP10.14□□□□□ -0.79
SHMT2-209ENST00000553949 SPATA2Q9UM82 520 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 POLR3KQ9Y2Y1 108 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-209ENST00000553949 PEX16Q9Y5Y5 336 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 CREBBPQ92793 2442 aa10.14□□□□□ -0.79
SHMT2-209ENST00000553949 METTL21EPA6NDL7 271 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 A6NHS1 94 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 FOXI3A8MTJ6 420 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-209ENST00000553949 C22orf46C9J442 243 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 SOCS1O15524 211 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 PDCD6O75340 191 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 CSN2P05814 226 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 FOSL1P15407 271 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 CHATP28329 748 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 BLVRBP30043 206 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-209ENST00000553949 KCNJ3P48549 501 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 EDDM3AQ14507 147 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 ATXN7L3Q14CW9 347 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-209ENST00000553949 MOGAT2Q3SYC2 334 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 GDPD3Q7L5L3 318 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 OR56B1Q8NGI3 324 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 H1FXQ92522 213 aaKnown RBP10.13□□□□□ -0.79
SHMT2-209ENST00000553949 SLC25A38Q96DW6 304 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 NEDD4LQ96PU5 975 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 DCTN5Q9BTE1 182 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 ATG5Q9H1Y0 275 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 RHBDL2Q9NX52 303 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 COMMD3Q9UBI1 195 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 RPUSD1Q9UJJ7 312 aaKnown RBP10.13□□□□□ -0.79
SHMT2-209ENST00000553949 CELSR1Q9NYQ6 3014 aa10.13□□□□□ -0.79
SHMT2-209ENST00000553949 TRBV23-1A0A0A0MS06 115 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 TRAV20A0A0B4J274 112 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 MCRIP1C9JLW8 97 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 RAB27BO00194 218 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 TGFAP01135 160 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 GLAP06280 429 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 ZNF16P17020 682 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-209ENST00000553949 ERP29P30040 261 aaKnown RBP10.12□□□□□ -0.79
SHMT2-209ENST00000553949 P2RX3P56373 397 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 TMEM50BP56557 158 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 EDDM3BP56851 147 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 RPL31P62899 125 aaKnown RBP10.12□□□□□ -0.79
SHMT2-209ENST00000553949 PAX2Q02962 417 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 KRTAP1-1Q07627 177 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 AESQ08117 197 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 RBM39Q14498 530 aaKnown RBP10.12□□□□□ -0.79
SHMT2-209ENST00000553949 KRBOX4Q5JUW0 171 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 UBE2NLQ5JXB2 153 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 MZT2AQ6P582 158 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 C6orf201Q7Z4U5 140 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 RTN4RL2Q86UN3 420 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 SAMD12Q8N8I0 201 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 OR4M1Q8NGD0 313 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 OR10R2Q8NGX6 335 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 NEK7Q8TDX7 302 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 RAB40AQ8WXH6 277 aa10.12□□□□□ -0.79
SHMT2-209ENST00000553949 DACT3Q96B18 629 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-209ENST00000553949 TMEM186Q96B77 213 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms