RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 IFT22Q9H7X7 185 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 ABRACLQ9P1F3 81 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A10PA6NDY2 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A18PA6NE21 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A16PA6NEW6 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A20PA6NIJ5 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A8PA6NJQ4 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A7PA6NKC0 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A22PA8MWA6 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A12PA8MX19 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A5PA8MXJ8 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A23PA8MXZ1 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 B4DSR2 109 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 C22orf46C9J442 243 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 ZNF701M0R085 212 aaPredicted RBP17.56■□□□□ 0.4
VPS29-206ENST00000549578 TMEM127O75204 238 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 MSMBP08118 114 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 INHBBP09529 407 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A15PP0C7V4 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A13PP0C7W8 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A14PP0C7W9 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 FAM90A24PP0C7X0 464 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 RAB6AP20340 208 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 GZMKP49863 264 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 EDDM3AQ14507 147 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 BTN2A1Q7KYR7 527 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 MRI1Q9BV20 369 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 DPCDQ9BVM2 203 aaPredicted RBP17.56■□□□□ 0.4
VPS29-206ENST00000549578 NDUFA13Q9P0J0 144 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 RCC2Q9P258 522 aaKnown RBP17.56■□□□□ 0.4
VPS29-206ENST00000549578 ETV7Q9Y603 341 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 ABCA1O95477 2261 aa17.56■□□□□ 0.4
VPS29-206ENST00000549578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.55■□□□□ 0.42e-11■■■■■ 31.7
VPS29-206ENST00000549578 SOCS1O15524 211 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 VEGFCP49767 419 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 SCAND1P57086 179 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 ATXN7L3Q14CW9 347 aaPredicted RBP17.55■□□□□ 0.4
VPS29-206ENST00000549578 NKAPLQ5M9Q1 402 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 RAB12Q6IQ22 244 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 RTN4RL2Q86UN3 420 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 FAM89BQ8N5H3 189 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 PTX4Q96A99 478 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 ING3Q9NXR8 418 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 SPATA2Q9UM82 520 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 PEX16Q9Y5Y5 336 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 CSPG4Q6UVK1 2322 aa17.55■□□□□ 0.4
VPS29-206ENST00000549578 LOC105371242A0A075B767 164 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 PDCD6O75340 191 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 ZNF16P17020 682 aaPredicted RBP17.54■□□□□ 0.4
VPS29-206ENST00000549578 ZNF182P17025 639 aaPredicted RBP17.54■□□□□ 0.4
VPS29-206ENST00000549578 BLVRBP30043 206 aaPredicted RBP17.54■□□□□ 0.4
VPS29-206ENST00000549578 KRTAP1-1Q07627 177 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 GDPD3Q7L5L3 318 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 TPRX1Q8N7U7 411 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 OR4M1Q8NGD0 313 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 PPP1R35Q8TAP8 253 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 KCTD12Q96CX2 325 aaKnown RBP17.54■□□□□ 0.4
VPS29-206ENST00000549578 DGCR14Q96DF8 476 aaKnown RBP17.54■□□□□ 0.4
VPS29-206ENST00000549578 SLC25A38Q96DW6 304 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 ATG5Q9H1Y0 275 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 SPACA1Q9HBV2 294 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 MMP26Q9NRE1 261 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 RHBDL2Q9NX52 303 aa17.54■□□□□ 0.4
VPS29-206ENST00000549578 MGST3O14880 152 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 TGFAP01135 160 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 FUT3P21217 361 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 CHATP28329 748 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 SOX6P35712 828 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 EDDM3BP56851 147 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 MOGAT2Q3SYC2 334 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 CYB5R2Q6BCY4 276 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 OR5D13Q8NGL4 314 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 POM121Q96HA1 1249 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 NEDD4LQ96PU5 975 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 SMR3AQ99954 134 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 DCTN5Q9BTE1 182 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 DCUN1D5Q9BTE7 237 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 CCDC59Q9P031 241 aaKnown RBP17.53■□□□□ 0.4
VPS29-206ENST00000549578 COMMD3Q9UBI1 195 aa17.53■□□□□ 0.4
VPS29-206ENST00000549578 RPUSD1Q9UJJ7 312 aaKnown RBP17.53■□□□□ 0.4
VPS29-206ENST00000549578 FOXI3A8MTJ6 420 aaPredicted RBP17.52■□□□□ 0.4
VPS29-206ENST00000549578 GPR37O15354 613 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 AESQ08117 197 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 CD276Q5ZPR3 534 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 C6orf201Q7Z4U5 140 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 SAMD12Q8N8I0 201 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 OR56B1Q8NGI3 324 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 PLPPR1Q8TBJ4 325 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 NEK7Q8TDX7 302 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 AP3S1Q92572 193 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 C19orf12Q9NSK7 152 aa17.52■□□□□ 0.4
VPS29-206ENST00000549578 POLR3KQ9Y2Y1 108 aaPredicted RBP17.52■□□□□ 0.4
VPS29-206ENST00000549578 TLN2Q9Y4G6 2542 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 MEX3AA1L020 520 aaKnown RBP17.52■□□□□ 0.39
VPS29-206ENST00000549578 METTL21EPA6NDL7 271 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 MCRIP1C9JLW8 97 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 CSN2P05814 226 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 TMEM50BP56557 158 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 PAX2Q02962 417 aa17.52■□□□□ 0.39
VPS29-206ENST00000549578 ACOT12Q8WYK0 555 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms