RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CDRT1O95170 752 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 HTR3BO95264 441 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 LIPFP07098 398 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CALCBP10092 127 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CD36P16671 472 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 SERPINA2P20848 420 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 MDKP21741 143 aaPredicted RBP8.35□□□□□ -1.07
VPS28-204ENST00000526054 CALRP27797 417 aaKnown RBP8.35□□□□□ -1.07
VPS28-204ENST00000526054 RANBP1P43487 201 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 COL10A1Q03692 680 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 IL13RA2Q14627 380 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 GPR107Q5VW38 600 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CD200R1LQ6Q8B3 271 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 GLIPR1L1Q6UWM5 242 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 BRD3OSQ6XYD6 125 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 LRRTM1Q86UE6 522 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CLVS1Q8IUQ0 354 aaPredicted RBP8.35□□□□□ -1.07
VPS28-204ENST00000526054 TAF15Q92804 592 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS28-204ENST00000526054 YIPF6Q96EC8 236 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 DMRTB1Q96MA1 342 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 DCTN5Q9BTE1 182 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 CNTD2Q9H8S5 307 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 IL36RNQ9UBH0 155 aa8.35□□□□□ -1.07
VPS28-204ENST00000526054 RPUSD1Q9UJJ7 312 aaKnown RBP8.35□□□□□ -1.07
VPS28-204ENST00000526054 SOX21Q9Y651 276 aaPredicted RBP8.35□□□□□ -1.07
VPS28-204ENST00000526054 DSCAML1Q8TD84 2053 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 A0A1W2PQ09 198 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 K7N7A8 449 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 SIRPB1O00241 398 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 PDCD5O14737 125 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 FCN3O75636 299 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 TK1P04183 234 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 UBBP0CG47 229 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 ZNF44P15621 663 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OMGP23515 440 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 GABRR1P24046 479 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 DUSP1P28562 367 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 PSMD7P51665 324 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 TMBIM6P55061 237 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 TIMM50Q3ZCQ8 353 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 SLC22A6Q4U2R8 563 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 GPR157Q5UAW9 335 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 C16orf87Q6PH81 154 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 LINC00596Q86U02 117 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 CMTM4Q8IZR5 234 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OR8H2Q8N162 312 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OSR2Q8N2R0 312 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 FGFRL1Q8N441 504 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 CHST4Q8NCG5 386 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 Q8NFD4 153 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OR51T1Q8NGJ9 327 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OR5D13Q8NGL4 314 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 OR10K1Q8NGX5 313 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 C8orf46Q8TAG6 207 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 TBC1D15Q8TC07 691 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 ZDHHC16Q969W1 377 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 SNX22Q96L94 193 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 FUNDC2Q9BWH2 189 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 PPIL3Q9H2H8 161 aaKnown RBP8.34□□□□□ -1.07
VPS28-204ENST00000526054 GHRLQ9UBU3 117 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 SSR3Q9UNL2 185 aa8.34□□□□□ -1.07
VPS28-204ENST00000526054 TRAV1-2A0A0B4J238 106 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 A0A1W2PPH5 198 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 ZNF701M0R085 212 aaPredicted RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 DEGS1O15121 323 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 ZNF737O75373 536 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 OR2H2O95918 312 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 GTF2F2P13984 249 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 HTR2CP28335 458 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 FGF9P31371 208 aaPredicted RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 SCN1BQ07699 218 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 GRK1Q15835 563 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 DEFB112Q30KQ8 113 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 NHLRC3Q5JS37 347 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 C1orf100Q5SVJ3 147 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 METTL11BQ5VVY1 283 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 C22orf42Q6IC83 251 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 GDPD3Q7L5L3 318 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 LYPD6Q86Y78 171 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 ANKRD13BQ86YJ7 626 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 FAM185AQ8N0U4 392 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 KIR3DL3Q8N743 410 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 OR4D6Q8NGJ1 314 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 OR6M1Q8NGM8 313 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 RAB2BQ8WUD1 216 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 DGCR14Q96DF8 476 aaKnown RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 MRPS24Q96EL2 167 aaKnown RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 BCL7BQ9BQE9 202 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 PCGF1Q9BSM1 259 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 RBM38Q9H0Z9 239 aaKnown RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 CST11Q9H112 138 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 PLGRKTQ9HBL7 147 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 TNFRSF19Q9NS68 423 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 RSL24D1Q9UHA3 163 aaKnown RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 ST3GAL6Q9Y274 331 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 AK6Q9Y3D8 172 aaKnown RBP8.33□□□□□ -1.08
VPS28-204ENST00000526054 CEPT1Q9Y6K0 416 aa8.33□□□□□ -1.08
VPS28-204ENST00000526054 A0A1B0GUS0 222 aa8.32□□□□□ -1.08
VPS28-204ENST00000526054 TMEM82A0PJX8 343 aa8.32□□□□□ -1.08
VPS28-204ENST00000526054 FUOMA2VDF0 154 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms