RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ATG5Q9H1Y0 275 aa9.86□□□□□ -0.83
CUX1-210ENST00000497815 SEBOXQ9HB31 216 aaPredicted RBP9.86□□□□□ -0.83
CUX1-210ENST00000497815 MMP26Q9NRE1 261 aa9.86□□□□□ -0.83
CUX1-210ENST00000497815 RSL24D1Q9UHA3 163 aaKnown RBP9.86□□□□□ -0.83
CUX1-210ENST00000497815 RAB22AQ9UL26 194 aa9.86□□□□□ -0.83
CUX1-210ENST00000497815 VPS13CQ709C8 3753 aa9.86□□□□□ -0.83
CUX1-210ENST00000497815 CR1P17927 2039 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 ITPR3Q14573 2671 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 A0A1W2PQ09 198 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 DPPA5A6NC42 116 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 A8MXK9 166 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 SOCS1O15524 211 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 LY6G6DO95868 133 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 LMO1P25800 156 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 BLVRBP30043 206 aaPredicted RBP9.85□□□□□ -0.83
CUX1-210ENST00000497815 RORCP51449 518 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 KRTAP1-1Q07627 177 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 AESQ08117 197 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 CD276Q5ZPR3 534 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 SIGIRRQ6IA17 410 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 RAB12Q6IQ22 244 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 RTN4RL2Q86UN3 420 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 GLCCI1Q86VQ1 547 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 FAM185AQ8N0U4 392 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 OR5D13Q8NGL4 314 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 TMEM186Q96B77 213 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 NUDT16L1Q9BRJ7 211 aaKnown RBP9.85□□□□□ -0.83
CUX1-210ENST00000497815 TM2D1Q9BX74 207 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 C19orf12Q9NSK7 152 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 HIF1ANQ9NWT6 349 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 FBLN5Q9UBX5 448 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 PEX16Q9Y5Y5 336 aa9.85□□□□□ -0.83
CUX1-210ENST00000497815 TRAV20A0A0B4J274 112 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 IGHV2-70DA0A0C4DH43 119 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 SMIM31A0A1B0GVY4 71 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 UBE2QL1A1L167 161 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A10PA6NDY2 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A18PA6NE21 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A16PA6NEW6 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A20PA6NIJ5 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A8PA6NJQ4 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A7PA6NKC0 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A22PA8MWA6 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A12PA8MX19 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A5PA8MXJ8 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A23PA8MXZ1 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 MCRIP1C9JLW8 97 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 MGST3O14880 152 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 GPR37O15354 613 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 CD5LO43866 347 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 PDCD6O75340 191 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 ECDO95905 644 aaPredicted RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A15PP0C7V4 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A13PP0C7W8 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A14PP0C7W9 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAM90A24PP0C7X0 464 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FOSL1P15407 271 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 RAB6AP20340 208 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FUT3P21217 361 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 SOX6P35712 828 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 MOGAT2Q3SYC2 334 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 DCAF12L2Q5VW00 463 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAHD2BQ6P2I3 314 aaPredicted RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 CLEC9AQ6UXN8 241 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 Q71RC1 249 aaPredicted RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 C6orf201Q7Z4U5 140 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 BIVMQ86UB2 503 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 PLPPR1Q8TBJ4 325 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 RAB40AQ8WXH6 277 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 DYRK2Q92630 601 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 FAHD2AQ96GK7 314 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 NEDD4LQ96PU5 975 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 DCTN5Q9BTE1 182 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 GSX1Q9H4S2 264 aaPredicted RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 IFT22Q9H7X7 185 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 SPACA1Q9HBV2 294 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 YAE1D1Q9NRH1 226 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 ABRACLQ9P1F3 81 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 ONECUT1Q9UBC0 465 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 COMMD3Q9UBI1 195 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 RPUSD1Q9UJJ7 312 aaKnown RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 ETV7Q9Y603 341 aa9.84□□□□□ -0.83
CUX1-210ENST00000497815 MAP1AP78559 2803 aaPredicted RBP9.84□□□□□ -0.83
CUX1-210ENST00000497815 A0A075B6Q4 140 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 PPIAL4CA0A0B4J2A2 164 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 METTL21EPA6NDL7 271 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 ENSAO43768 121 aaKnown RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 PPIAL4GP0DN37 164 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 ZNF182P17025 639 aaPredicted RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 CHATP28329 748 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 GLIPR1P48060 266 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 DVL1P1P54792 670 aaPredicted RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 P2RX3P56373 397 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 RPL31P62899 125 aaKnown RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 RBM39Q14498 530 aaKnown RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 KRBOX4Q5JUW0 171 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 BTNL3Q6UXE8 466 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 FAM89BQ8N5H3 189 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 SAMD12Q8N8I0 201 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 OR56B1Q8NGI3 324 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms