RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RESP18Q5W5W9 173 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 SPNS3Q6ZMD2 512 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 LYPD6Q86Y78 171 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 Q8NAQ8 132 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 DRAXINQ8NBI3 349 aaPredicted RBP1.38□□□□□ -2.19
VPS50-219ENST00000495039 OR2M3Q8NG83 312 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 MITD1Q8WV92 249 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 NELFBQ8WX92 580 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 OLFM3Q96PB7 478 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 COPS4Q9BT78 406 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 RBM12B-AS1Q9P1G2 102 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 FADS3Q9Y5Q0 445 aa1.38□□□□□ -2.19
VPS50-219ENST00000495039 BZW2Q9Y6E2 419 aaKnown RBP1.38□□□□□ -2.19
VPS50-219ENST00000495039 BRD4O60885 1362 aaPredicted RBP1.37□□□□□ -2.19
VPS50-219ENST00000495039 PGPA6NDG6 321 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 A6NED7 52 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 FFAR1O14842 300 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 SPOPO43791 374 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 MYO1DO94832 1006 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 PDYNP01213 254 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CGB3P0DN86 165 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CGB7P0DN87 165 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 M6PRP20645 277 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 PTNP21246 168 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CNTFRP26992 372 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 ELK4P28324 431 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 S100A2P29034 98 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 RAB25P57735 213 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CASP8Q14790 479 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 GUSBP1Q15486 140 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CST6Q15828 149 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 TNXAQ16473 311 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 NXNL2Q5VZ03 156 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 TPGS1Q6ZTW0 290 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 PID1Q7Z2X4 250 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 FAM58AQ8N1B3 248 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CDKL2Q92772 493 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 CIDECQ96AQ7 238 aaPredicted RBP1.37□□□□□ -2.19
VPS50-219ENST00000495039 ZNF396Q96N95 335 aaPredicted RBP1.37□□□□□ -2.19
VPS50-219ENST00000495039 CIB1Q99828 191 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 SLC25A31Q9H0C2 315 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 POMKQ9H5K3 350 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 U3KQK5 164 aa1.37□□□□□ -2.19
VPS50-219ENST00000495039 IGKV1D-37A0A075B6S9 117 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 G3V3Q6 166 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 M0QXV9 152 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 GPR75O95800 540 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 OPN1SWP03999 348 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 GABRA1P14867 456 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 CTLA4P16410 223 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 BGNP21810 368 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 CPN2P22792 545 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 DNASE1L1P49184 302 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 RAB38P57729 211 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 GOLGA7BQ2TAP0 167 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 SLC25A25Q6KCM7 469 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 HS3ST5Q8IZT8 346 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 SYS1Q8N2H4 156 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 PDCL2Q8N4E4 241 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 OR8K1Q8NGG5 319 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 CASTOR1Q8WTX7 329 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 CCL17Q92583 94 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 MAL2Q969L2 176 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 RAD51AP1Q96B01 352 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 C20orf166-AS1Q96NR2 134 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 LINC01587Q99440 93 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 APOL4Q9BPW4 351 aa1.36□□□□□ -2.19
VPS50-219ENST00000495039 MRPL16Q9NX20 251 aaKnown RBP1.36□□□□□ -2.19
VPS50-219ENST00000495039 TNIKQ9UKE5 1360 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 AK9Q5TCS8 1911 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 TRBV24-1A0A075B6N3 115 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 TRAV8-3A0A0A6YYJ7 113 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 A0A1B0GXF2 115 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 H3BP45 60 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 J3QKU1 62 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 SC5DO75845 299 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 VAPBO95292 243 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 GIMD1P0DJR0 217 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 CSRP1P21291 193 aaKnown RBP1.35□□□□□ -2.19
VPS50-219ENST00000495039 RANBP1P43487 201 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 ATP5J2P56134 94 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 VAMP3Q15836 100 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 ZNF181Q2M3W8 571 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 PYCR3Q53H96 274 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 ACTL10Q5JWF8 245 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 FAHD1Q6P587 224 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 FAM19A1Q7Z5A9 133 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 MARCH3Q86UD3 253 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 C10orf107Q8IVU9 208 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 MSRB3Q8IXL7 192 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 Q8NDZ9 215 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 OR8G5Q8NG78 346 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 OR52K1Q8NGK4 314 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 CACNG8Q8WXS5 425 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 OR8B2Q96RD0 313 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 KLF6Q99612 283 aaPredicted RBP1.35□□□□□ -2.19
VPS50-219ENST00000495039 STMN3Q9NZ72 180 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 OR5V1Q9UGF6 321 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 CYB5R1Q9UHQ9 305 aa1.35□□□□□ -2.19
VPS50-219ENST00000495039 POLR3AO14802 1390 aaPredicted RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms