RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 FOXRED2Q8IWF2 684 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 DEFB107AQ8IZN7 70 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 OR8H3Q8N146 312 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 FAM58AQ8N1B3 248 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 DNAAF1Q8NEP3 725 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 OR56B4Q8NH76 319 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 OR9G1Q8NH87 305 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 TOMM40LQ969M1 308 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 C10orf35Q96D05 121 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 BORCS8Q96FH0 119 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 DUX3Q96PT4 197 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 CNN2Q99439 309 aaKnown RBP6.43□□□□□ -1.38
USP39-216ENST00000490193 APOL4Q9BPW4 351 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 TTTY10Q9BZA0 68 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 DCLRE1BQ9H816 532 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 PLEKHA1Q9HB21 404 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 RBFOX1Q9NWB1 397 aaKnown RBP6.43□□□□□ -1.38
USP39-216ENST00000490193 MRM2Q9UI43 246 aaKnown RBP6.43□□□□□ -1.38
USP39-216ENST00000490193 GTF2A1LQ9UNN4 478 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 AMMECR1Q9Y4X0 333 aaPredicted RBP6.43□□□□□ -1.38
USP39-216ENST00000490193 SIRT4Q9Y6E7 314 aaPredicted RBP6.43□□□□□ -1.38
USP39-216ENST00000490193 SMAD5-AS1Q9Y6J3 95 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 SORL1Q92673 2214 aa6.43□□□□□ -1.38
USP39-216ENST00000490193 ODAMA1E959 279 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 FAM172BPA6NC97 362 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 ZNF729A6NN14 1252 aaPredicted RBP6.42□□□□□ -1.38
USP39-216ENST00000490193 SEC14L6B5MCN3 397 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 AP4M1O00189 453 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 CCRL2O00421 344 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 SH2D1BO14796 132 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 OR2H2O95918 312 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 RPLP1P05386 114 aaKnown RBP6.42□□□□□ -1.38
USP39-216ENST00000490193 CGB3P0DN86 165 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 CGB7P0DN87 165 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 RAP2AP10114 183 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 TMEM11P17152 192 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 PRKACAP17612 351 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 BCL3P20749 454 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 DUSP1P28562 367 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 GLIPR1P48060 266 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 RBP2P50120 134 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 INSL3P51460 131 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 RAB25P57735 213 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 FOXE3Q13461 319 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 EBI3Q14213 229 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 KPNB1Q14974 876 aaKnown RBP6.42□□□□□ -1.38
USP39-216ENST00000490193 PNLIPRP3Q17RR3 467 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 C17orf58Q2M2W7 97 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 TMEM179BQ7Z7N9 219 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 DHFR2Q86XF0 187 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 SBSPONQ8IVN8 264 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 ARHGAP24Q8N264 748 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 DRAM1Q8N682 238 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 OR4D6Q8NGJ1 314 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 PP6455Q8WZ26 134 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 RPEQ96AT9 228 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 COQ2Q96H96 371 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 KIRREL1Q96J84 757 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 ELAC2Q9BQ52 826 aaKnown RBP6.42□□□□□ -1.38
USP39-216ENST00000490193 TEX12Q9BXU0 123 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 GON7Q9BXV9 100 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 COMMD4Q9H0A8 199 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 HMG20AQ9NP66 347 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 CLN6Q9NWW5 311 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 TAGLN3Q9UI15 199 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 LINC00527Q9UJ94 153 aa6.42□□□□□ -1.38
USP39-216ENST00000490193 J3QR06 171 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 SIRPB1O00241 398 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 MAGEB4O15481 346 aaPredicted RBP6.41□□□□□ -1.38
USP39-216ENST00000490193 SYT7O43581 403 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 SNX3O60493 162 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 INMTO95050 263 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CYB5AP00167 134 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 SERPINA3P01011 423 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CST1P01037 141 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 ELANEP08246 267 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 ANXA8P13928 327 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 RAB7AP51149 207 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 ATP1B3P54709 279 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CBX1P83916 185 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 AESQ08117 197 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 MADCAM1Q13477 382 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 TRIM25Q14258 630 aaKnown RBP6.41□□□□□ -1.38
USP39-216ENST00000490193 RBM39Q14498 530 aaKnown RBP6.41□□□□□ -1.38
USP39-216ENST00000490193 DEFB136Q30KP8 78 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CXorf66Q5JRM2 361 aaPredicted RBP6.41□□□□□ -1.38
USP39-216ENST00000490193 UTF1Q5T230 341 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 TMEM236Q5W0B7 351 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 PLEKHG7Q6ZR37 379 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 LCNL1Q6ZST4 164 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CATSPERDQ86XM0 798 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 TGIF2LXQ8IUE1 241 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 SLC35F2Q8IXU6 374 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CHST4Q8NCG5 386 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 C4orf3Q8WVX3 66 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 HRASLS5Q96KN8 279 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 CITED4Q96RK1 184 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 ABCG5Q9H222 651 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 NCOR1P1Q9H4R4 102 aa6.41□□□□□ -1.38
USP39-216ENST00000490193 LINC00574Q9H8X3 128 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms