RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SPATA46Q5T0L3 261 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ZNF468Q5VIY5 522 aaPredicted RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 BIVMQ86UB2 503 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 TREM2Q9NZC2 230 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ZDHHC8Q9ULC8 765 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 NOTCH3Q9UM47 2321 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 DOPEY2Q9Y3R5 2298 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 LOC102724200A0A096LPH7 203 aaPredicted RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 KIR2DS1A0A191URI9 304 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ZNF737O75373 536 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 KIR2DS4P43632 304 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 CDX1P47902 265 aaPredicted RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 KIR2DS1Q14954 304 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 LPAL2Q16609 132 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 IQCJQ1A5X6 159 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 BSXQ3C1V8 233 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 TMEM92Q6UXU6 159 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 C1QL2Q7Z5L3 287 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ADPRHL1Q8NDY3 354 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 OR10A7Q8NGE5 316 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ASB10Q8WXI3 467 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 ABHD14AQ9BUJ0 271 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 MENTQ9BUN1 341 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 FAM117AQ9C073 453 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 CACFD1Q9UGQ2 172 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 IGLV1-36A0A0B4J1U3 117 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 C5orf49A4QMS7 147 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 E9PQ18 207 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 POU2F2P09086 479 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 DCDP81605 110 aaKnown RBP11.86□□□□□ -0.51
USP42-206ENST00000479544 GFI1BQ5VTD9 330 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 TBC1D26Q86UD7 250 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 KLHDC3Q9BQ90 382 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 VPS25Q9BRG1 176 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 OBP2BQ9NPH6 170 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 CBLN4Q9NTU7 201 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 GNG12Q9UBI6 72 aa11.86□□□□□ -0.51
USP42-206ENST00000479544 COLCA2A8K830 154 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 TNFSF11O14788 317 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 FAM3AP98173 230 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 IL13RA2Q14627 380 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 GAPTQ8N292 157 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 CBY1Q9Y3M2 126 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 CREBBPQ92793 2442 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 SCN5AQ14524 2016 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 DEGS1O15121 323 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 DEDDO75618 318 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 APLNRP35414 380 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 CCL28Q9NRJ3 127 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 DMRT1Q9Y5R6 373 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 PKDREJQ9NTG1 2253 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 IGKV1D-43A0A0B4J1Z2 117 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 GABRA2P47869 451 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 CEACAM16Q2WEN9 425 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 FAM58AQ8N1B3 248 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 MFRPQ9BY79 579 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 RFNGQ9Y644 331 aa11.85□□□□□ -0.51
USP42-206ENST00000479544 ANKUB1A6NFN9 424 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 M0R143 59 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 THBS4P35443 961 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 EDDM3BP56851 147 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 OR5I1Q13606 314 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 C1orf100Q5SVJ3 147 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.84□□□□□ -0.51
USP42-206ENST00000479544 OR1L3Q8NH93 324 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 FGF11Q92914 225 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 TM4SF19Q96DZ7 209 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 TMEM204Q9BSN7 226 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 NOSIPQ9Y314 301 aaKnown RBP11.84□□□□□ -0.51
USP42-206ENST00000479544 AUP1Q9Y679 476 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 PTPRDP23468 1912 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 FER1L5A0AVI2 2057 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 IGHV3-13P01766 116 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 IGHV3-7P01780 117 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 CRYAAP02489 173 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 PRF1P14222 555 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 GABRG2P18507 467 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 RAB4AP20338 218 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 UHRF2Q96PU4 802 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 IER2Q9BTL4 223 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 C12orf49Q9H741 205 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 PRSS50Q9UI38 385 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 MMP17Q9ULZ9 603 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 RALGAPA1Q6GYQ0 2036 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 GBF1Q92538 1859 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 ARGFXA6NJG6 315 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 AQP7P3A6NL99 342 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 MPPED1O15442 326 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 PCBD1P61457 104 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 ERVK-16P61578 105 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 VAMP3Q15836 100 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 HLA-BQ31612 363 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 OR10P1Q8NGE3 313 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 BORCS7Q96B45 105 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 ATP5SQ99766 215 aa11.84□□□□□ -0.51
USP42-206ENST00000479544 A0A1B0GTI1 187 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 PPYP01298 95 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 ROM1Q03395 351 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 C9orf40Q8IXQ3 194 aa11.83□□□□□ -0.51
USP42-206ENST00000479544 TMEM252Q8N6L7 170 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms