RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TMEM225BP0DP42 221 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 ZNF44P15621 663 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 RAB3AP20336 220 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 IL13RA2Q14627 380 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 RCN1Q15293 331 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 OR2G6Q5TZ20 316 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 ASCL4Q6XD76 172 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 TRAPPC6BQ86SZ2 158 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 DTX3Q8N9I9 347 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 OR51A2Q8NGJ7 313 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 OR51T1Q8NGJ9 327 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 OR4P4Q8NGL7 312 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 OR52N1Q8NH53 320 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 TMEM106AQ96A25 262 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 SMIM19Q96E16 107 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 CLEC7AQ9BXN2 247 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 NPFFR1Q9GZQ6 430 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 MMP27Q9H306 513 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 TCF7L1Q9HCS4 588 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 TAS2R4Q9NYW5 299 aa9.72□□□□□ -0.85
USP40-210ENST00000454354 SIRT4Q9Y6E7 314 aaPredicted RBP9.72□□□□□ -0.85
USP40-210ENST00000454354 ODAMA1E959 279 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 A6NDX4 124 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 CASQ2O14958 399 aaPredicted RBP9.71□□□□□ -0.86
USP40-210ENST00000454354 MAGEB3O15480 346 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 LALBAP00709 142 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 MYL12AP19105 171 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 CD34P28906 385 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 GLIPR1P48060 266 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 SOX2P48431 317 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 PAX5Q02548 391 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 AESQ08117 197 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 DYNC1I2Q13409 638 aaKnown RBP9.71□□□□□ -0.86
USP40-210ENST00000454354 FAM189A2Q15884 450 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 SSX2Q16385 188 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 LRRC36Q1X8D7 754 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 OGFRL1Q5TC84 451 aaPredicted RBP9.71□□□□□ -0.86
USP40-210ENST00000454354 OR52W1Q6IF63 320 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 CCBE1Q6UXH8 406 aaPredicted RBP9.71□□□□□ -0.86
USP40-210ENST00000454354 RTN4RL2Q86UN3 420 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 Q8N2B8 174 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 DHRSXQ8N5I4 330 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 ZNF485Q8NCK3 441 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 NCOR1P1Q9H4R4 102 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 BABAM2Q9NXR7 383 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 PITPNC1Q9UKF7 332 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 ZNF281Q9Y2X9 895 aa9.71□□□□□ -0.86
USP40-210ENST00000454354 PLXNB1O43157 2135 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 A0A087X0M5 115 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 TRBV5-5A0A0J9YX44 114 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 A0A1B0GX30 115 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 DEGS1O15121 323 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 WIPF1O43516 503 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 IGLV1-47P01700 117 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 CDK2P24941 298 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 CAPGP40121 348 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 PTGFRP43088 359 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 BDH1Q02338 343 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 MED21Q13503 144 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 ATXN7L3Q14CW9 347 aaPredicted RBP9.7□□□□□ -0.86
USP40-210ENST00000454354 HERPUD1Q15011 391 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 PLA1AQ53H76 456 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 NHLRC3Q5JS37 347 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 KRBOX4Q5JUW0 171 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 PRAMEF5Q5TYX0 476 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 DMKNQ6E0U4 476 aaPredicted RBP9.7□□□□□ -0.86
USP40-210ENST00000454354 OR2T6Q8NHC8 308 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 FBLIM1Q8WUP2 373 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 TNFAIP8L1Q8WVP5 186 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 CFHR4Q92496 578 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 TMEM80Q96HE8 168 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 GPER1Q99527 375 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 ZNF702PQ9H963 129 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 ABCB10Q9NRK6 738 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 IL36GQ9NZH8 169 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 CNOT2Q9NZN8 540 aaKnown RBP9.7□□□□□ -0.86
USP40-210ENST00000454354 CLEC2DQ9UHP7 191 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 SIGLEC9Q9Y336 463 aa9.7□□□□□ -0.86
USP40-210ENST00000454354 PRKDCP78527 4128 aaKnown RBP9.7□□□□□ -0.86
USP40-210ENST00000454354 TRAV24A0A0B4J272 114 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 EFCAB10A6NFE3 127 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 ZNF729A6NN14 1252 aaPredicted RBP9.69□□□□□ -0.86
USP40-210ENST00000454354 FAM90A22PA8MWA6 464 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 H0YJX3 145 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 GPX5O75715 221 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 GNAO1P09471 354 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 CGB3P0DN86 165 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 CGB7P0DN87 165 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 IGFBP3P17936 291 aaPredicted RBP9.69□□□□□ -0.86
USP40-210ENST00000454354 FSTP19883 344 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 HTR1DP28221 377 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 GDNFP39905 211 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 KCNJ3P48549 501 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 RAB13P51153 203 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 RPS11P62280 158 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP40-210ENST00000454354 SCN1BQ07699 218 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 ST3GAL4Q11206 333 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 C17orf58Q2M2W7 97 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 C2orf68Q2NKX9 166 aa9.69□□□□□ -0.86
USP40-210ENST00000454354 YIF1BQ5BJH7 314 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms