RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PFN1P07737 140 aaKnown RBP9.27□□□□□ -0.93
USP54-204ENST00000422491 CAPZBP47756 277 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 NOGQ13253 232 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 HNF4GQ14541 408 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 P2RY6Q15077 328 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 MPV17LQ2QL34 196 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 CARD17Q5XLA6 110 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 H1FOOQ8IZA3 346 aaPredicted RBP9.27□□□□□ -0.93
USP54-204ENST00000422491 R3HDM4Q96D70 268 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 CFHR5Q9BXR6 569 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 RNF208Q9H0X6 261 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 ZNF665Q9H7R5 613 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 COPS7AQ9UBW8 275 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 PIGLQ9Y2B2 252 aa9.27□□□□□ -0.93
USP54-204ENST00000422491 NCOA6Q14686 2063 aaPredicted RBP9.26□□□□□ -0.93
USP54-204ENST00000422491 ZFP92A6NM28 416 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 B4DGG1 531 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 OR4A8P0C604 315 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 AADACP22760 399 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SRPXP78539 464 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 MYBPHQ13203 477 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 Q6ZPA2 131 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 GPR137CQ8N3F9 429 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 MRGPRX1Q96LB2 322 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 TMEM56Q96MV1 263 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SIGLEC12Q96PQ1 595 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 ATP5SQ99766 215 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 P4HTMQ9NXG6 502 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 TMEM56-RWDD3S4R434 201 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SEC16AO15027 2179 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 KNL1Q8NG31 2342 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 IGHV5-51A0A0C4DH38 117 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 VSTM2BA6NLU5 285 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 ANGPTL7O43827 346 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 KLF8O95600 359 aaPredicted RBP9.26□□□□□ -0.93
USP54-204ENST00000422491 VAMP2P63027 116 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 ZNF154Q13106 437 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 CLN3Q13286 438 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 NSDHLQ15738 373 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 HIST3H3Q16695 136 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 C16orf47Q6ZP98 133 aaPredicted RBP9.26□□□□□ -0.93
USP54-204ENST00000422491 C20orf196Q8IYI0 205 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SPIN2AQ99865 258 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SPIN2BQ9BPZ2 258 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 CERS4Q9HA82 394 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 SOHLH2Q9NX45 425 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 GAB2Q9UQC2 676 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 PTRH2Q9Y3E5 179 aaKnown RBP9.26□□□□□ -0.93
USP54-204ENST00000422491 DOCK8Q8NF50 2099 aa9.26□□□□□ -0.93
USP54-204ENST00000422491 RTTNQ86VV8 2226 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 TDRD6O60522 2096 aaKnown RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 CLEC18AA5D8T8 446 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 MARCH11A6NNE9 402 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 JMJD7P0C870 316 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 MMP9P14780 707 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 RAB4AP20338 218 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 TDGF1P3P51864 188 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 ID3Q02535 119 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 PAX5Q02548 391 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 C17orf67Q0P5P2 114 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 WDR25Q64LD2 544 aaPredicted RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 BRICD5Q6PL45 260 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 IL22RA1Q8N6P7 574 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 CLEC18CQ8NCF0 446 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 PLPPR1Q8TBJ4 325 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 ACY3Q96HD9 319 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 ZNF160Q9HCG1 818 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 LRFN1Q9P244 771 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 HS3ST3A1Q9Y663 406 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 RANBP2P49792 3224 aaKnown RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 F5P12259 2224 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 THADAQ6YHU6 1953 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 ZNF814B7Z6K7 855 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 F5H5K5 113 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 ADAM20O43506 726 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 SPRY1O43609 319 aaPredicted RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 NR2C1P13056 603 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 GZMHP20718 246 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 GFERP55789 205 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 SUMO3P55854 103 aaPredicted RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 MTCP1P56278 107 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 EXT1Q16394 746 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 RSPO1Q2MKA7 263 aaPredicted RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 TEX38Q6PEX7 206 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 TGIF2LYQ8IUE0 185 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 SELENOHQ8IZQ5 122 aaKnown RBP9.25□□□□□ -0.93
USP54-204ENST00000422491 C10orf35Q96D05 121 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 P2RX4Q99571 388 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 CBLN4Q9NTU7 201 aa9.25□□□□□ -0.93
USP54-204ENST00000422491 H3BMH7 237 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 M0R143 59 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 PPYP01298 95 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 ZNF25P17030 456 aaPredicted RBP9.24□□□□□ -0.93
USP54-204ENST00000422491 PAX9P55771 341 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 FBXW4P57775 412 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 ERVFC1-1P60608 527 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 HERV-K104P61576 105 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 ZNF726P1Q15940 193 aa9.24□□□□□ -0.93
USP54-204ENST00000422491 RSPO4Q2I0M5 234 aaPredicted RBP9.24□□□□□ -0.93
USP54-204ENST00000422491 NMSQ5H8A3 153 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms