RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 AESQ08117 197 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 RAB11BQ15907 218 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 MICBQ29980 383 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 C1orf229Q6ZS94 237 aaPredicted RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 OSR2Q8N2R0 312 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 FAM89BQ8N5H3 189 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 C11orf42Q8N5U0 333 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 NKAIN3Q8N8D7 197 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 OR6M1Q8NGM8 313 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 H1FXQ92522 213 aaKnown RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 COQ2Q96H96 371 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 ARHGAP5-AS1Q96IT6 56 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 TECTBQ96PL2 329 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 REG4Q9BYZ8 158 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 PPA2Q9H2U2 334 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 DLL4Q9NR61 685 aa3.34□□□□□ -1.88
LIG4-201ENST00000356922 BEX4Q9NWD9 120 aaPredicted RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 MRPS7Q9Y2R9 242 aaKnown RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 TMA7Q9Y2S6 64 aaKnown RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 SOX21Q9Y651 276 aaPredicted RBP3.34□□□□□ -1.88
LIG4-201ENST00000356922 IGKV1D-8A0A087WSZ0 117 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SMIM31A0A1B0GVY4 71 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 UBE2QL1A1L167 161 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 KIAA1324LA8MWY0 1029 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 FAM25AB3EWG3 89 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 FAM25CB3EWG5 89 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 FAM25GB3EWG6 89 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 LGALS8O00214 317 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ADAM20O43506 726 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 OR7C1O76099 320 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 HAND1O96004 215 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 GNB3P16520 340 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 NDUFB7P17568 137 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 PAX6P26367 422 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 OR3A1P47881 315 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 GLIPR1P48060 266 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 PDLIM4P50479 330 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 LCN2P80188 198 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 PAX2Q02962 417 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 NKAPLQ5M9Q1 402 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 USP43Q70EL4 1123 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 NLRC3Q7RTR2 1065 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SAMD12Q8N8I0 201 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 OR10Z1Q8NGY1 313 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ERGIC1Q969X5 290 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 DACT3Q96B18 629 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 FOXC2Q99958 501 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 PIMREGQ9BSJ6 248 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 METTL9Q9H1A3 318 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 CHMP1AQ9HD42 196 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 SPATA2Q9UM82 520 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 VWFP04275 2813 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 H7C1Q1 480 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 IGHV2-5P01817 119 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 HLA-DQB1P01920 261 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 GTF2F2P13984 249 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 RCC1P18754 421 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 OMGP23515 440 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 LMO1P25800 156 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 RORCP51449 518 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ATXN7L3Q14CW9 347 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 KCNJ8Q15842 424 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ATPAF1Q5TC12 328 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 Q71RC1 249 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 TRAPPC6BQ86SZ2 158 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 CDH26Q8IXH8 852 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SAXO1Q8IYX7 474 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SUMF2Q8NBJ7 301 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 TMEM185AQ8NFB2 350 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SETD6Q8TBK2 473 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 MAFIPQ8WZ33 124 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 NINJ1Q92982 152 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 MSI2Q96DH6 328 aaKnown RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 ABHD1Q96SE0 405 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 NXF2Q9GZY0 626 aaKnown RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 C19orf12Q9NSK7 152 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 IL36GQ9NZH8 169 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ZNF230Q9UIE0 474 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 NKX6-3A6NJ46 265 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 K7N7A8 449 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 BPNT1O95861 308 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 IGHV3-7P01780 117 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 TK1P04183 234 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 MUC1P15941 1255 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 CDK2P24941 298 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 CHATP28329 748 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 EDDM3BP56851 147 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 GUCA2AQ02747 115 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SNX29P2Q8IUI4 249 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SLC7A5P1Q8MH63 180 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 LRRC75A-AS1Q8N1F1 130 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 SDSLQ96GA7 329 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 TMEM59Q9BXS4 323 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 C6orf62Q9GZU0 229 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 GSX1Q9H4S2 264 aaPredicted RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 ZNRD1Q9P1U0 126 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 ZMAT5Q9UDW3 170 aaKnown RBP3.33□□□□□ -1.88
LIG4-201ENST00000356922 PEX16Q9Y5Y5 336 aa3.33□□□□□ -1.88
LIG4-201ENST00000356922 MEIS3P1A6NDR6 274 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TMEM235A6NFC5 223 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms