RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FGF14Q92915 247 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 MOB3AQ96BX8 217 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 GNPNAT1Q96EK6 184 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 WFIKKN1Q96NZ8 548 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 ANGPTL4Q9BY76 406 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 VSIRQ9H7M9 311 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 CERS4Q9HA82 394 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 CISD1Q9NZ45 108 aaKnown RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 LAMP3Q9UQV4 416 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 VDAC3Q9Y277 283 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 DLEU1O43261 78 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 FGF5P12034 268 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 AADACP22760 399 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 FGF8P55075 233 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 ELLP55199 621 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 ERVFC1-1P60608 527 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 ERVS71-1P61550 626 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 GNB2P62879 340 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 C1orf61Q13536 156 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 PMS2P11Q13670 270 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 THEM4Q5T1C6 240 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 Q6ZSR6 202 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 C16orf82Q7Z2V1 217 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 THNSL2Q86YJ6 484 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 OR13H1Q8NG92 308 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 PLPPR1Q8TBJ4 325 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 SIGLEC12Q96PQ1 595 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 GPHA2Q96T91 129 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 ELOVL1Q9BW60 279 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 RPRMQ9NS64 109 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 P4HTMQ9NXG6 502 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 VAX2Q9UIW0 290 aa5.88□□□□□ -1.47
VPS39-202ENST00000348544 POLR3KQ9Y2Y1 108 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 NCOA6Q14686 2063 aaPredicted RBP5.88□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DS5A0A0G2JLQ3 304 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DL5BA0A0G2JN68 375 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 A0A0G2JNG1 304 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DL5BA0A0G2JPC4 375 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 C3orf85A0A1B0GTC6 90 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TMEM210A6NLX4 147 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 B4E171 279 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF814B7Z6K7 855 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DS3K7RE56 304 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ADAM20O43506 726 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 SPRY1O43609 319 aaPredicted RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 OPN1LWP04000 364 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 DTYMKP23919 212 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PLA2G5P39877 138 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TSPAN7P41732 249 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PAX9P55771 341 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 CLRN1P58418 232 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TAS2R30P59541 319 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 HNF4GQ14541 408 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DS5Q14953 304 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 HERPUD1Q15011 391 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 EXT1Q16394 746 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 CLEC12BQ2HXU8 276 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 DCAF10Q5QP82 559 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 HLA-DQA1Q5Y7H0 255 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 SLC25A47Q6Q0C1 308 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 BTNL3Q6UXE8 466 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF66Q6ZN08 573 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIR2DL5AQ8N109 375 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF441Q8N8Z8 693 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PGAM5Q96HS1 289 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 RPP25Q9BUL9 199 aaKnown RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 CTDSP1Q9GZU7 261 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TMEM222Q9H0R3 208 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 LRFN1Q9P244 771 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 IL17BQ9UHF5 180 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 GOLT1BQ9Y3E0 138 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 V9GYS6 101 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 KIAA2026Q5HYC2 2103 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 COL5A1P20908 1838 aaPredicted RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 SEC16AO15027 2179 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 REV3LO60673 3130 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 IGKV1-27A0A075B6S5 117 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 A0A1W2PNV4 684 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TMEM150CB9EJG8 249 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 MPPED1O15442 326 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TRAF3IP2O43734 574 aaPredicted RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 DHRS3O75911 302 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 HLA-HP01893 362 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TUBG1P23258 451 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PCP4P48539 62 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 EIF3IQ13347 325 aaKnown RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 NCR3LG1Q68D85 454 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF787Q6DD87 383 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 LCN15Q6UWW0 184 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 DPPA3Q6W0C5 159 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 H1FOOQ8IZA3 346 aaPredicted RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 SELENOHQ8IZQ5 122 aaKnown RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF295-AS1Q8N0V1 137 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PRR18Q8N4B5 295 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 OR51G1Q8NGK1 321 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 TMEM170AQ8WVE7 144 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 ZNF845Q96IR2 970 aaPredicted RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 ATP5SQ99766 215 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 RSG1Q9BU20 258 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 GPR173Q9NS66 373 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms