RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 MICU1Q9BPX6 476 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 RTL8AQ9BWD3 113 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF471Q9BX82 626 aaPredicted RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 BARX1Q9HBU1 254 aaPredicted RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 FAM25EA8MYX2 175 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 IQCF6A8MYZ5 107 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 AGFG2O95081 481 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 IGLV1-44P01699 117 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 AKR1C4P17516 323 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 FPR2P25090 351 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 PSMB6P28072 239 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 HAGHLQ6PII5 290 aaPredicted RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 ADAD2Q8NCV1 583 aaKnown RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 TMEM185AQ8NFB2 350 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 CYYR1Q96J86 154 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 SFXN3Q9BWM7 321 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 BCL2L14Q9BZR8 327 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 NMES1Q9C002 83 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF442Q9H7R0 627 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 DMXL2Q8TDJ6 3036 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 LILRA1O75019 489 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 FCGR3AP08637 254 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 ATF4P18848 351 aaPredicted RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 SNTB1Q13884 538 aaKnown RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 FAM76BQ5HYJ3 339 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 PEG10Q86TG7 708 aaKnown RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 CASTOR1Q8WTX7 329 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 MAFIPQ8WZ33 124 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 ARPC5LQ9BPX5 153 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 HDHD3Q9BSH5 251 aaPredicted RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 OR51I2Q9H344 312 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 TAS2R3Q9NYW6 316 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 OSGIN2Q9Y236 505 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 INTS1Q8N201 2190 aaKnown RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 SDCBPO00560 298 aaPredicted RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 CEACAM8P31997 349 aaPredicted RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 AADACL3Q5VUY0 350 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 KCTD9Q7L273 389 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 OR13G1Q8NGZ3 307 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 EXTL1Q92935 676 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 PIGMQ9H3S5 423 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 FN3KRPQ9HA64 309 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 SPACA1Q9HBV2 294 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 CHMP1AQ9HD42 196 aaPredicted RBP13.08□□□□□ -0.32
SF3B4-201ENST00000271628 C12orf4Q9NQ89 552 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 NECAP2Q9NVZ3 263 aa13.08□□□□□ -0.32
SF3B4-201ENST00000271628 TRBV6-7A0A0A0MS04 114 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 A0A0B4J2A0 478 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 C5orf51A6NDU8 294 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 F5H0A9 414 aaPredicted RBP13.07□□□□□ -0.32
SF3B4-201ENST00000271628 TEX46H3BTG2 121 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 PRRG2O14669 202 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 CECR9P0C854 216 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 NPY4RP50391 375 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 UCNP55089 124 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 PSG7Q13046 419 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF273Q14593 569 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 TIMM23BQ5SRD1 257 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 KLF14Q8TD94 323 aaPredicted RBP13.07□□□□□ -0.32
SF3B4-201ENST00000271628 MARS2Q96GW9 593 aaKnown RBP13.07□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF286AQ9HBT8 521 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF581Q9P0T4 197 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 SHPKQ9UHJ6 478 aa13.07□□□□□ -0.32
SF3B4-201ENST00000271628 ANKRD11Q6UB99 2663 aaPredicted RBP13.07□□□□□ -0.32
SF3B4-201ENST00000271628 LRP5LA4QPB2 252 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 TRIM77I1YAP6 450 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 J3QT63 122 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 SYNGR1O43759 233 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 TMPRSS3P57727 454 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 ERVS71-1P61550 626 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 ATXN7L3Q14CW9 347 aaPredicted RBP13.06□□□□□ -0.32
SF3B4-201ENST00000271628 PDCD1Q15116 288 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 SRSF7Q16629 238 aaKnown RBP eCLIP13.06□□□□□ -0.32
SF3B4-201ENST00000271628 FAM74A1Q5RGS3 127 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 BRICD5Q6PL45 260 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 UQCC3Q6UW78 93 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 Q8IYB0 196 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 STOML3Q8TAV4 291 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 C5orf66Q9H5L9 145 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 ZC4H2Q9NQZ6 224 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 MBD2Q9UBB5 411 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 POLDIP2Q9Y2S7 368 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 SLC25A15Q9Y619 301 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 SVILO95425 2214 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 IGKV1D-8A0A087WSZ0 117 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 EEF1E1-BLOC1S5C9J1V9 151 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 APOC3P02656 99 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 OPRM1P35372 400 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 IL13RA2Q14627 380 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 BEX5Q5H9J7 111 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 ZNF474Q6S9Z5 364 aaPredicted RBP13.06□□□□□ -0.32
SF3B4-201ENST00000271628 ADAT1Q9BUB4 502 aaKnown RBP13.06□□□□□ -0.32
SF3B4-201ENST00000271628 RAB18Q9NP72 206 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 TMEM100Q9NV29 134 aa13.06□□□□□ -0.32
SF3B4-201ENST00000271628 RCC2Q9P258 522 aaKnown RBP13.06□□□□□ -0.32
SF3B4-201ENST00000271628 IGHV1-18A0A0C4DH31 117 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 TEX13DA0A0J9YY54 714 aaPredicted RBP13.05□□□□□ -0.32
SF3B4-201ENST00000271628 RAB19A4D1S5 217 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 TMEM210A6NLX4 147 aa13.05□□□□□ -0.32
SF3B4-201ENST00000271628 F8VVB4 439 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms