RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MYL9P24844 172 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 PAX2Q02962 417 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 SCN1BQ07699 218 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 SCGB2A2Q13296 93 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 ZNF146Q15072 292 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 SYT6Q5T7P8 510 aaPredicted RBP14.96□□□□□ -0.01
CLN3-239ENST00000628023 GLIPR1L1Q6UWM5 242 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 UQCC2Q9BRT2 126 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 PCDHB16Q9NRJ7 776 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 ONECUT1Q9UBC0 465 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 STUB1Q9UNE7 303 aa14.96□□□□□ -0.01
CLN3-239ENST00000628023 KIR2DS1A0A191URI9 304 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 TRDV1A0A1B0GX56 115 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 TK1P04183 234 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 SRSF2Q01130 221 aaKnown RBP14.95□□□□□ -0.02
CLN3-239ENST00000628023 GPR176Q14439 515 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 ELP2Q6IA86 826 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 FAM185AQ8N0U4 392 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 OR4D6Q8NGJ1 314 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 PPP1R35Q8TAP8 253 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 DCTN5Q9BTE1 182 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 FAM234AQ9H0X4 552 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 IL36GQ9NZH8 169 aa14.95□□□□□ -0.02
CLN3-239ENST00000628023 TRBV23-1A0A0A0MS06 115 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 K7N7A8 449 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 DEGS1O15121 323 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 OR2H2O95918 312 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 PPIAL4GP0DN37 164 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 GALP22466 123 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 PAX8Q06710 450 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 EDDM3AQ14507 147 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 GRK1Q15835 563 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 PIGYQ3MUY2 71 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 METTL11BQ5VVY1 283 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 C22orf42Q6IC83 251 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 CD200R1LQ6Q8B3 271 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 ASCL4Q6XD76 172 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 GDPD3Q7L5L3 318 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 OSR2Q8N2R0 312 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 TBC1D15Q8TC07 691 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 DACT3Q96B18 629 aaPredicted RBP14.94□□□□□ -0.02
CLN3-239ENST00000628023 SNX22Q96L94 193 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 CHST6Q9GZX3 395 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 PLGRKTQ9HBL7 147 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 SSR3Q9UNL2 185 aa14.94□□□□□ -0.02
CLN3-239ENST00000628023 AK6Q9Y3D8 172 aaKnown RBP14.94□□□□□ -0.02
CLN3-239ENST00000628023 PDCD5O14737 125 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 ZNF737O75373 536 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 AVPP01185 164 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 GTF2F2P13984 249 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 CD36P16671 472 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 EDDM3BP56851 147 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 RPL31P62899 125 aaKnown RBP14.93□□□□□ -0.02
CLN3-239ENST00000628023 IL13RA2Q14627 380 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 PDCD1Q15116 288 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 CMTM4Q8IZR5 234 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 OR8H2Q8N162 312 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 CHST4Q8NCG5 386 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 OR4M1Q8NGD0 313 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 OR5D13Q8NGL4 314 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 NANPQ8TBE9 248 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 PCGF1Q9BSM1 259 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 OCEL1Q9H607 264 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 SEBOXQ9HB31 216 aaPredicted RBP14.93□□□□□ -0.02
CLN3-239ENST00000628023 OPN4Q9UHM6 478 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 ST3GAL6Q9Y274 331 aa14.93□□□□□ -0.02
CLN3-239ENST00000628023 NBEAL1Q6ZS30 2694 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 A0A0A6YYJ9 748 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 TMEM82A0PJX8 343 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 CRTAPO75718 401 aaPredicted RBP14.92□□□□□ -0.02
CLN3-239ENST00000628023 TOX4O94842 621 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 UBBP0CG47 229 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 HTR2CP28335 458 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 RBM11P57052 281 aaKnown RBP14.92□□□□□ -0.02
CLN3-239ENST00000628023 ARF6P62330 175 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 C1orf229Q6ZS94 237 aaPredicted RBP14.92□□□□□ -0.02
CLN3-239ENST00000628023 LY6G5BQ8NDX9 201 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 OR51T1Q8NGJ9 327 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 OR6M1Q8NGM8 313 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 CST11Q9H112 138 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 PPA2Q9H2U2 334 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 C19orf12Q9NSK7 152 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 GHRLQ9UBU3 117 aa14.92□□□□□ -0.02
CLN3-239ENST00000628023 SVEP1Q4LDE5 3571 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 TRAV1-2A0A0B4J238 106 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 LOC100506127A0A0U1RQW1 187 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 A0A1W2PP11 408 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 A0A1W2PPH5 198 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 HSPB6O14558 160 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 PSPNO60542 156 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 OR7C1O76099 320 aaPredicted RBP14.91□□□□□ -0.02
CLN3-239ENST00000628023 OR3A1P47881 315 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 PSMD7P51665 324 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 BLMHQ13867 455 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 RAB11BQ15907 218 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 PAN3Q58A45 887 aaKnown RBP14.91□□□□□ -0.02
CLN3-239ENST00000628023 Q6P435 159 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 C17orf107Q6ZR85 190 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 LINC00596Q86U02 117 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 LYPD6Q86Y78 171 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms