RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 MED22Q15528 200 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 RPL22L1Q6P5R6 122 aaKnown RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 UTS2BQ765I0 119 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 C1QL4Q86Z23 238 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 ZNRF1Q8ND25 227 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 DNAAF1Q8NEP3 725 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 TMEM185AQ8NFB2 350 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 OPALINQ96PE5 141 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 FAM234AQ9H0X4 552 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 IGKV1-27A0A075B6S5 117 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 OR4C45A6NMZ5 311 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 INMTO95050 263 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 FUT6P51993 359 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 GTF2A1P52655 376 aaPredicted RBP15.42■□□□□ 0.06
CDX1-202ENST00000616154 GP2P55259 537 aaKnown RBP15.42■□□□□ 0.06
CDX1-202ENST00000616154 ALKBH1Q13686 389 aaKnown RBP15.42■□□□□ 0.06
CDX1-202ENST00000616154 HERPUD1Q15011 391 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 AANATQ16613 207 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 ODF4Q2M2E3 257 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 C11orf88Q6PI97 169 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 RDH10Q8IZV5 341 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 FAM185AQ8N0U4 392 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 ZNF561Q8N587 486 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 CD177Q8N6Q3 437 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 C17orf50Q8WW18 174 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 AJUBAQ96IF1 538 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 ZNF488Q96MN9 340 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 SSX3Q99909 188 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 MEGF9Q9H1U4 602 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 SEBOXQ9HB31 216 aaPredicted RBP15.42■□□□□ 0.06
CDX1-202ENST00000616154 VCX3AQ9NNX9 186 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 SLC7A11Q9UPY5 501 aa15.42■□□□□ 0.06
CDX1-202ENST00000616154 PLXNB1O43157 2135 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 RFPL4AA6NLU0 287 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 RFPL4AL1F8VTS6 287 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 ANGPTL7O43827 346 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 CPEP16870 476 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 KIR2DS4P43632 304 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 EFNB2P52799 333 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 NEDD8Q15843 81 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 LRRC75BQ2VPJ9 315 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 PPP1R35Q8TAP8 253 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 SMIM19Q96E16 107 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 ADAT3Q96EY9 351 aaPredicted RBP15.41■□□□□ 0.06
CDX1-202ENST00000616154 PGLYRP3Q96LB9 341 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 C19orf12Q9NSK7 152 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 SCOCQ9UIL1 159 aa15.41■□□□□ 0.06
CDX1-202ENST00000616154 IGKV1-9A0A0C4DH69 117 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 NXPH2O95156 264 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 SERPINA3P01011 423 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 PRDX2P32119 198 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 CNN3Q15417 329 aaKnown RBP15.4■□□□□ 0.06
CDX1-202ENST00000616154 CRIP3Q6Q6R5 217 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 Q6ZTK2 550 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 ANGPTL5Q86XS5 388 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 OR4C13Q8NGP0 309 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 RANBP3Q9H6Z4 567 aaPredicted RBP15.4■□□□□ 0.06
CDX1-202ENST00000616154 MTCH1Q9NZJ7 389 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 SIGLEC9Q9Y336 463 aa15.4■□□□□ 0.06
CDX1-202ENST00000616154 TMEM212A6NML5 194 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 ZFPL1O95159 310 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 CAPZA1P52907 286 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 SSX1Q16384 188 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 LY6EQ16553 131 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 MKXQ8IYA7 352 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 TRMT10AQ8TBZ6 339 aaKnown RBP15.39■□□□□ 0.05
CDX1-202ENST00000616154 SPSB1Q96BD6 273 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 RAB18Q9NP72 206 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 HHLA2Q9UM44 414 aa15.39■□□□□ 0.05
CDX1-202ENST00000616154 TRBV2A0A0J9YWF9 115 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 A0A1W2PPH5 198 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 FAM230AA0A1W2PPH8 454 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 CELP19835 753 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 PSMB9P28065 219 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 RPL5P46777 297 aaKnown RBP15.38■□□□□ 0.05
CDX1-202ENST00000616154 C11orf42Q8N5U0 333 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 CFHR4Q92496 578 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 UFD1Q92890 307 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 BORCS8Q96FH0 119 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 CEP19Q96LK0 163 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 NDUFB11Q9NX14 153 aa15.38■□□□□ 0.05
CDX1-202ENST00000616154 H3BSH0 61 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 ZNF737O75373 536 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 ALX3O95076 343 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 ATF1P18846 271 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 PRKACBP22694 351 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 RBP2P50120 134 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 RPS11P62280 158 aaKnown RBP eCLIP15.37■□□□□ 0.05
CDX1-202ENST00000616154 RPL31P62899 125 aaKnown RBP15.37■□□□□ 0.05
CDX1-202ENST00000616154 LIAT1Q6ZQX7 453 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 Q8IYB0 196 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 ZFP41Q8N8Y5 198 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 OR51A4Q8NGJ6 313 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 OR13F1Q8NGS4 319 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 OR10AC1Q8NH08 325 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 OR2T6Q8NHC8 308 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 RGP1Q92546 391 aaPredicted RBP15.37■□□□□ 0.05
CDX1-202ENST00000616154 GHSRQ92847 366 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 PDCD1LG2Q9BQ51 273 aa15.37■□□□□ 0.05
CDX1-202ENST00000616154 HEXA-AS1Q9H8Q6 139 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms