RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 FADS6Q8N9I5 356 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF565Q8N9K5 539 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 UBE2ZQ9H832 354 aaPredicted RBP12.17□□□□□ -0.46
COL6A1-207ENST00000612273 GHRLQ9UBU3 117 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 UMODP07911 640 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 LYL1P12980 280 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 CHATP28329 748 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 MALLQ13021 153 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 PDZD11Q5EBL8 140 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF385CQ66K41 422 aaPredicted RBP12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF611Q8N823 705 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 OR2G3Q8NGZ4 309 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 NTNG2Q96CW9 530 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF488Q96MN9 340 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 TM2D1Q9BX74 207 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ATPIF1Q9UII2 106 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ZFHX4Q86UP3 3567 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 LINC00587B1AMM8 73 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 EPHA8P29322 1005 aaPredicted RBP12.16□□□□□ -0.46
COL6A1-207ENST00000612273 SNCAP37840 140 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF133P52736 654 aaPredicted RBP12.16□□□□□ -0.46
COL6A1-207ENST00000612273 SUCLG1P53597 346 aaKnown RBP12.16□□□□□ -0.46
COL6A1-207ENST00000612273 Q6ZPA2 131 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 IL1F10Q8WWZ1 152 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF286AQ9HBT8 521 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 PROK2Q9HC23 129 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 SLC7A10Q9NS82 523 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 BOD1L1Q8NFC6 3051 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 EIF1BO60739 113 aaKnown RBP12.16□□□□□ -0.46
COL6A1-207ENST00000612273 SCTP09683 121 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 PLA2G5P39877 138 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 KCNMB1Q16558 191 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 LYSMD4Q5XG99 296 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF695Q8IW36 515 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 IFI44Q8TCB0 444 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 CRIM1Q9NZV1 1036 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 PISDQ9UG56 409 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 ICE1Q9Y2F5 2266 aa12.16□□□□□ -0.46
COL6A1-207ENST00000612273 TRAV20A0A0B4J274 112 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 APOC1P02654 83 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 RPS10P46783 165 aaKnown RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 FOXG1P55316 489 aaPredicted RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 LIAT1Q6ZQX7 453 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 OR51H1Q8NH63 302 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 RHBDD1Q8TEB9 315 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 DNASE2BQ8WZ79 361 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 FOXB1Q99853 325 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 KPTNQ9Y664 436 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 PRSS44E7EML9 344 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 ETV2O00321 342 aaPredicted RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 HLA-HP01893 362 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 TCN2P20062 427 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 HAAOP46952 286 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 GPM6AP51674 278 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 DSCR4P56555 118 aaPredicted RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 CNN3Q15417 329 aaKnown RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SURF2Q15527 256 aaPredicted RBP12.15□□□□□ -0.46
COL6A1-207ENST00000612273 FAM27BQ5VT28 67 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF343Q6P1L6 599 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SKA3Q8IX90 412 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 LGI3Q8N145 548 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 IFT22Q9H7X7 185 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 BCO1Q9HAY6 547 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SEMA5BQ9P283 1151 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 LY6G6EA0A0G2JKS1 128 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 HS3ST1O14792 307 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 ADAM20O43506 726 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 NR2C1P13056 603 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SULT1A1P50225 295 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SOHLH1Q5JUK2 328 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 SLC25A24Q6NUK1 477 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 CARFQ8N187 725 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 UBAC2Q8NBM4 344 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 RDH5Q92781 318 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 U3KQA8 63 aa12.15□□□□□ -0.46
COL6A1-207ENST00000612273 NUDT19A8MXV4 375 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 C9J4A7 227 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 PPYP01298 95 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 ZNF16P17020 682 aaPredicted RBP12.14□□□□□ -0.47
COL6A1-207ENST00000612273 EWSR1Q01844 656 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL6A1-207ENST00000612273 MRPL14Q6P1L8 145 aaKnown RBP12.14□□□□□ -0.47
COL6A1-207ENST00000612273 SPEM1Q8N4L4 309 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 ADPRHL1Q8NDY3 354 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 OR10D3Q8NH80 312 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 RNASE11Q8TAA1 199 aaKnown RBP12.14□□□□□ -0.47
COL6A1-207ENST00000612273 TMEM54Q969K7 222 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 SYT3Q9BQG1 590 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 PLEKHA2Q9HB19 425 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 TUBD1Q9UJT1 453 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 LIPGQ9Y5X9 500 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 ARHGAP21Q5T5U3 1957 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 IGHV1-45A0A0A0MS14 117 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 DANCRP0C864 163 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 GDF1P27539 372 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 NKX2-1P43699 371 aaPredicted RBP12.14□□□□□ -0.47
COL6A1-207ENST00000612273 VAMP2P63027 116 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 FAM3AP98173 230 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 OR56B2PQ8NGI1 322 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 OR5C1Q8NGR4 320 aa12.14□□□□□ -0.47
COL6A1-207ENST00000612273 MSI2Q96DH6 328 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms