RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MTNR1BP49286 362 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 SCN1BQ07699 218 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 ZNF273Q14593 569 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 RSU1Q15404 277 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 TUSC1Q2TAM9 212 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 SPIN3Q5JUX0 258 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 CD200R1LQ6Q8B3 271 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 GLIPR1L1Q6UWM5 242 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 TCF23Q7RTU1 214 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 CDH26Q8IXH8 852 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 TPRX1Q8N7U7 411 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 PNLDC1Q8NA58 520 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 OR51T1Q8NGJ9 327 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 NANPQ8TBE9 248 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 PHYHIPQ92561 330 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 SNX22Q96L94 193 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 PCGF1Q9BSM1 259 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 FAM234AQ9H0X4 552 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 METTL9Q9H1A3 318 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 RHOFQ9HBH0 211 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 TCF7L1Q9HCS4 588 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 NDUFB11Q9NX14 153 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 IL36GQ9NZH8 169 aa11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 MRPS28Q9Y2Q9 187 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-217ENST00000598558 MXRA5Q9NR99 2828 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 TRAV24A0A0B4J272 114 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 SLC33A1O00400 549 aaPredicted RBP11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 SH2D1BO14796 132 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 TOX4O94842 621 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 CCL3L1P16619 93 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 EPHA1P21709 976 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 GABRR1P24046 479 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 DLX6P56179 175 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 SLC22A6Q4U2R8 563 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 C1orf100Q5SVJ3 147 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 SYT6Q5T7P8 510 aaPredicted RBP11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 FAM185AQ8N0U4 392 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 OR8H2Q8N162 312 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 TMEM104Q8NE00 496 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 THRSPQ92748 146 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 TNFRSF14Q92956 283 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 KCNK15Q9H427 330 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 EXOSC4Q9NPD3 245 aaKnown RBP11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 ONECUT1Q9UBC0 465 aa11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 AK6Q9Y3D8 172 aaKnown RBP11.67□□□□□ -0.54
SHKBP1-217ENST00000598558 CENPVL3A0A0U1RRI6 287 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 TRDV1A0A1B0GX56 115 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 CCRL2O00421 344 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 DEGS1O15121 323 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 SERPINA2P20848 420 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 CALRP27797 417 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 RPL31P62899 125 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 TRAM1Q15629 374 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 GRK1Q15835 563 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 NEDD8Q15843 81 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 RUSC1-AS1Q66K80 236 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 OR10K2Q6IF99 312 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 HCP5Q6MZN7 132 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 VMO1Q7Z5L0 202 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 PDZD9Q8IXQ8 264 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 OSR2Q8N2R0 312 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 SLC25A28Q96A46 364 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 CPNE2Q96FN4 548 aaPredicted RBP11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 COQ2Q96H96 371 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 ZNF48Q96MX3 618 aaPredicted RBP11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 BANF2Q9H503 90 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 SIRT7Q9NRC8 400 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 NUP50Q9UKX7 468 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 KPTNQ9Y664 436 aa11.66□□□□□ -0.54
SHKBP1-217ENST00000598558 TRBV23-1A0A0A0MS06 115 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 TRAV40A0A0B4J280 105 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 A0A1W2PQ09 198 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 MEGF11A6BM72 1044 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 TRIM64CA6NLI5 447 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 GEMIN2O14893 280 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 ZNF44P15621 663 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 PSMA1P25786 263 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 GLIPR1P48060 266 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 EDDM3BP56851 147 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 RBM11P57052 281 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 KLRD1Q13241 179 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 EDDM3AQ14507 147 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 IL13RA2Q14627 380 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 BRICD5Q6PL45 260 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 FIP1L1Q6UN15 594 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 BRD3OSQ6XYD6 125 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 BPIFB2Q8N4F0 458 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 KIR3DL3Q8N743 410 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 TSPAN14Q8NG11 270 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 TBC1D15Q8TC07 691 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 FCGR1BQ92637 280 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 LHX4Q969G2 390 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 DMRTB1Q96MA1 342 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 SLC6A7Q99884 636 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 UQCC2Q9BRT2 126 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 OR51E2Q9H255 320 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 PPA2Q9H2U2 334 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 RNF167Q9H6Y7 350 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 ZNF696Q9H7X3 374 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 ST3GAL6Q9Y274 331 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms