RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PPYP01298 95 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 IGHV3-9P01782 118 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TK1P04183 234 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 OR5AC1P0C628 307 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 FAM157CP0CG43 387 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 MMP9P14780 707 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 BCL3P20749 454 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 AADACP22760 399 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 MDH2P40926 338 aaKnown RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 PI4KAP42356 2102 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 HAAOP46952 286 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 RAB1AP62820 205 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 GNG3P63215 75 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 PJVKQ0ZLH3 352 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 CLN3Q13286 438 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 DAZAP2Q15038 168 aaPredicted RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 C10orf91Q5T1B1 145 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 FBXW9Q5XUX1 488 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 ZNF880Q6PDB4 577 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 DHRS13Q6UX07 377 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 LINC00696Q6ZRV3 163 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 MOB1BQ7L9L4 216 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 LDLRAD3Q86YD5 345 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 CALHM1Q8IU99 346 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 COMMD1Q8N668 190 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 SPERTQ8NA61 448 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 UBAC2Q8NBM4 344 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 BPIFCQ8NFQ6 507 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 OR5T2Q8NGG2 359 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TMED6Q8WW62 240 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 OR5P3Q8WZ94 311 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 SLC39A7Q92504 469 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TOMM40LQ969M1 308 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 MSI2Q96DH6 328 aaKnown RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 WDYHV1Q96HA8 205 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 GMPPAQ96IJ6 420 aaPredicted RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 BOD1Q96IK1 185 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TMEM56Q96MV1 263 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 CABLES2Q9BTV7 478 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 FGF23Q9GZV9 251 aaPredicted RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 ARV1Q9H2C2 271 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 ZDHHC11Q9H8X9 412 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TAF9BQ9HBM6 251 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 ZC4H2Q9NQZ6 224 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 PARP11Q9NR21 331 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 PLA2G3Q9NZ20 509 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 PRR13Q9NZ81 148 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 GSKIPQ9P0R6 139 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 IL17BQ9UHF5 180 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 LHX6Q9UPM6 363 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 CARHSP1Q9Y2V2 147 aaKnown RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 AMDHD2Q9Y303 409 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TMEM56-RWDD3S4R434 201 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 ASCC3Q8N3C0 2202 aaKnown RBP5.37□□□□□ -1.55
CLN3-223ENST00000566472 ALPK2Q86TB3 2170 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 CDH23Q9H251 3354 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 A0A096LPE4 126 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 C3orf85A0A1B0GTC6 90 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 A0A1W2PPZ6 126 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 CLEC18AA5D8T8 446 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF503-AS2A6NEH8 195 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SLC22A20A6NK97 555 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF705EA8MWA4 302 aaPredicted RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 NPIPB11E5RHQ5 1161 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 J3QT63 122 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 GPR31O00270 319 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 DEGS1O15121 323 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 MPPED1O15442 326 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ST8SIA3O43173 380 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 LRP3O75074 770 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ATG12O94817 140 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 CNOT4O95628 575 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 IL18BPO95998 194 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 IGHG3P01860 377 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 APOC3P02656 99 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SEC11BP0C7V7 166 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SELEP16581 610 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 TUBG1P23258 451 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 S100GP29377 79 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 RFC3P40938 356 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 NPBWR2P48146 333 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 KCNJ3P48549 501 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 RAB5CP51148 216 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 GPM6AP51674 278 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 FOXG1P55316 489 aaPredicted RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 FXYD4P59646 89 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ARG2P78540 354 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 HLA-DRB3P79483 266 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 MRPL49Q13405 166 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF169Q14929 603 aaPredicted RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 GABRA6Q16445 453 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 TBC1D28Q2M2D7 210 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 MST1LQ2TV78 715 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF766Q5HY98 468 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 RPL7L1Q6DKI1 246 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 FBXW12Q6X9E4 464 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 Q6ZPA2 131 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 Q8IYB0 196 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SVBPQ8N300 66 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 IL22RA1Q8N6P7 574 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms