RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SLC25A28Q96A46 364 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 COQ2Q96H96 371 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 WDFY2Q96P53 400 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 MYCBPQ99417 103 aaPredicted RBP7.56□□□□□ -1.2
VPS35-206ENST00000565228 SLC6A7Q99884 636 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 RNF167Q9H6Y7 350 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 TMEM138Q9NPI0 162 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 FOXJ3Q9UPW0 622 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 GSTK1Q9Y2Q3 226 aa7.56□□□□□ -1.2
VPS35-206ENST00000565228 NKX6-3A6NJ46 265 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 RNASEK-C17orf49H0YIS7 233 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 SIRPB1O00241 398 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 SLC33A1O00400 549 aaPredicted RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 ENSAO43768 121 aaKnown RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 PPIAL4GP0DN37 164 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 TMEM225BP0DP42 221 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 NDUFB7P17568 137 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 EPHA1P21709 976 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 GATA3P23771 443 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 PAX6P26367 422 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 TGFBR1P36897 503 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 MED21Q13503 144 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 GPR50Q13585 617 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 KCNJ8Q15842 424 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 ARMCX4Q5H9R4 360 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 SIGIRRQ6IA17 410 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 OR10K2Q6IF99 312 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 FAM53AQ6NSI3 398 aaPredicted RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 ZNF773Q6PK81 442 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 CD200R1LQ6Q8B3 271 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 Q6ZPA2 131 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 ZNF367Q7RTV3 350 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 VMO1Q7Z5L0 202 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 MKXQ8IYA7 352 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 ZNF561Q8N587 486 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 ZSCAN4Q8NAM6 433 aaPredicted RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 OR51T1Q8NGJ9 327 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 SPATA3Q8NHX4 192 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 PLPPR1Q8TBJ4 325 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 UFD1Q92890 307 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 NR1H4Q96RI1 486 aaPredicted RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 PCGF1Q9BSM1 259 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 SEBOXQ9HB31 216 aaPredicted RBP7.55□□□□□ -1.2
VPS35-206ENST00000565228 SIRT7Q9NRC8 400 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 LPAR3Q9UBY5 353 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 ING4Q9UNL4 249 aa7.55□□□□□ -1.2
VPS35-206ENST00000565228 A0A0A6YYD4 124 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 TRAV39A0A0B4J263 110 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 A0A1W2PRD5 423 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 A0A1W2PRF3 423 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 A0A1W2PRM7 423 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 CD2P06729 351 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 SMIM18P0DKX4 95 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 SRMP19623 302 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 GLIPR1P48060 266 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 OR10A3P58181 314 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 QRFPP83859 136 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 UNC119Q13432 240 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 KRTAP24-1Q3LI83 254 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 LRRC10Q5BKY1 277 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 METTL11BQ5VVY1 283 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 GLIPR1L1Q6UWM5 242 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 BPIFB2Q8N4F0 458 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 ZDHHC22Q8N966 263 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 ASCC1Q8N9N2 400 aaKnown RBP7.54□□□□□ -1.2
VPS35-206ENST00000565228 MED30Q96HR3 178 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 SNX22Q96L94 193 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 YTHDF1Q9BYJ9 559 aaKnown RBP7.54□□□□□ -1.2
VPS35-206ENST00000565228 FAM192AQ9GZU8 254 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 PPA2Q9H2U2 334 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 BANF2Q9H503 90 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 NEK6Q9HC98 313 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 NDUFB11Q9NX14 153 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 IL36GQ9NZH8 169 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 ONECUT1Q9UBC0 465 aa7.54□□□□□ -1.2
VPS35-206ENST00000565228 AK6Q9Y3D8 172 aaKnown RBP7.54□□□□□ -1.2
VPS35-206ENST00000565228 A0A0B4J203 849 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SMIM30A4D0T7 59 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 TRIM64CA6NLI5 447 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 HSPB6O14558 160 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 GEMIN2O14893 280 aaKnown RBP7.53□□□□□ -1.2
VPS35-206ENST00000565228 MRPS14O60783 128 aaKnown RBP7.53□□□□□ -1.2
VPS35-206ENST00000565228 TOX4O94842 621 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 HTR3BO95264 441 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 CHRM2P08172 466 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 CGB3P0DN86 165 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 CGB7P0DN87 165 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SERPINA2P20848 420 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 GABRA5P31644 462 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SRP14P37108 136 aaKnown RBP7.53□□□□□ -1.2
VPS35-206ENST00000565228 MTNR1BP49286 362 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 PPP3R1P63098 170 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SCN1BQ07699 218 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 AESQ08117 197 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 EDDM3AQ14507 147 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 NEDD8Q15843 81 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 DEFB112Q30KQ8 113 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 KCTD21Q4G0X4 260 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 SLC22A6Q4U2R8 563 aa7.53□□□□□ -1.2
VPS35-206ENST00000565228 C1orf100Q5SVJ3 147 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms