RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MCTS1Q9ULC4 181 aaKnown RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 LAMTOR2Q9Y2Q5 125 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 RNF11Q9Y3C5 154 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 KIAA0556O60303 1618 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ATP7BP35670 1465 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CASKIN1Q8WXD9 1431 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CHD4Q14839 1912 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 A0A1B0GU03 582 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ATP6AP2A0A1C7CYW4 349 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 IDSB3KWA1 339 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 PRSS46E5RG02 174 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 F5H6K3 240 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 M0R2Z0 102 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 PLPP1O14494 284 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 HSPB6O14558 160 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 OR7A17O14581 309 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 DIRAS1O95057 198 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 MPC2O95563 127 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 SEMA4FO95754 770 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CRYGDP07320 174 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 GKN3PP0CG01 181 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ACP2P11117 423 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 NSG1P42857 185 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 GPR6P46095 362 aaPredicted RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 RPL29P47914 159 aaKnown RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 ZNF133P52736 654 aaPredicted RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 RPS28P62857 69 aaKnown RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 FKBP1BP68106 108 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 HIST1H3AP68431 136 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 H3F3AP84243 136 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 C1orf61Q13536 156 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 LRRC26Q2I0M4 334 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 TRIM40Q6P9F5 258 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ZNF773Q6PK81 442 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 UNQ6126/PRO20091Q6UXV3 157 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 Q6ZSV7 163 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 HIST2H3AQ71DI3 136 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 SERPINA11Q86U17 422 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 TMPRSS12Q86WS5 348 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CBLN2Q8IUK8 224 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ABHD12Q8N2K0 398 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 OR4K5Q8NGD3 323 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 OR5A1Q8NGJ0 315 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 OR5K2Q8NHB8 316 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 PLPPR1Q8TBJ4 325 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 MRPL53Q96EL3 112 aaKnown RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 CCDC115Q96NT0 180 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 IL17FQ96PD4 163 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 NDFIP1Q9BT67 221 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 SEC11CQ9BY50 192 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 C20orf27Q9GZN8 174 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 OR51J1Q9H342 316 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 RHOJQ9H4E5 214 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 PRORYQ9H606 182 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CDH20Q9HBT6 801 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 A4GALTQ9NPC4 353 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CBLN4Q9NTU7 201 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 C1orf123Q9NWV4 160 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 TAS2R16Q9NYV7 291 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 PLEKHB1Q9UF11 243 aaPredicted RBP4.31□□□□□ -1.72
VPS35-205ENST00000563984 SLC7A7Q9UM01 511 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 RAI2Q9Y5P3 530 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 RFNGQ9Y644 331 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ANKRD26Q9UPS8 1709 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 FRMPD1Q5SYB0 1578 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ABCC3O15438 1527 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 ADGRB3O60242 1522 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 CPS1P31327 1500 aa4.31□□□□□ -1.72
VPS35-205ENST00000563984 NKTRP30414 1462 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 SCN5AQ14524 2016 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 A0A0G2JLM5 398 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 A0A1B0GX51 115 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR4C46A6NHA9 309 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR5B21A6NL26 309 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ZNF724A8MTY0 619 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 INMT-MINDY4F8WBC2 141 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 H3BTX0 84 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 J3KR12 359 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 J3KT08 172 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TAAR5O14804 337 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 FABP7O15540 132 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 MPDU1O75352 247 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GAGE7O76087 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GABARAPO95166 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 SEMG1P04279 462 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR4Q2P0C623 313 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR5G3P0C626 314 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GAGE12FP0CL80 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GAGE12GP0CL81 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GAGE12IP0CL82 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CT45A6P0DMU7 189 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CT45A5P0DMU8 189 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CT45A7P0DMV0 189 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 FGF3P11487 239 aaPredicted RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 CYBAP13498 195 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 MGMTP16455 207 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ZNF19P17023 458 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RAB5AP20339 215 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 EVI2AP22794 236 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ATP6V0CP27449 155 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms