RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC25A10Q9UBX3 287 aaPredicted RBP8.09□□□□□ -1.11
CLK3-208ENST00000562626 OPN4Q9UHM6 478 aa8.09□□□□□ -1.11
CLK3-208ENST00000562626 A0A0A6YYD4 124 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 TRAV24A0A0B4J272 114 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 IGHV2-70DA0A0C4DH43 119 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 MEGF11A6BM72 1044 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 K7N7A8 449 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 SLC33A1O00400 549 aaPredicted RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 SLC17A2O00624 439 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 GEMIN2O14893 280 aaKnown RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 NDUFB3O43676 98 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 NDUFA2O43678 99 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 FOXH1O75593 365 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 CYB5AP00167 134 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 TK1P04183 234 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 VSIG8P0DPA2 414 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 NDUFB7P17568 137 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 HTR2CP28335 458 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 SDC2P34741 201 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 RBM11P57052 281 aaKnown RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 MXD1Q05195 221 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 SCN1BQ07699 218 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 KCNJ8Q15842 424 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 CR1LQ2VPA4 569 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 SPIN3Q5JUX0 258 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 SIGIRRQ6IA17 410 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 BRICD5Q6PL45 260 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 NLRC3Q7RTR2 1065 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 ASCC1Q8N9N2 400 aaKnown RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 PNLDC1Q8NA58 520 aaKnown RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 LY6G5BQ8NDX9 201 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 OR4M1Q8NGD0 313 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 UQCC2Q9BRT2 126 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 NICN1Q9BSH3 213 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 DCTN5Q9BTE1 182 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 METTL9Q9H1A3 318 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 VCX3AQ9NNX9 186 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 RPUSD1Q9UJJ7 312 aaKnown RBP8.08□□□□□ -1.12
CLK3-208ENST00000562626 SSR3Q9UNL2 185 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 ST3GAL6Q9Y274 331 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 INSIG2Q9Y5U4 225 aa8.08□□□□□ -1.12
CLK3-208ENST00000562626 LOC105371242A0A075B767 164 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 TRAV20A0A0B4J274 112 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 A8MV72 311 aaPredicted RBP8.07□□□□□ -1.12
CLK3-208ENST00000562626 TMEM14DPA8MWL7 114 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 HSPB6O14558 160 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 LDLRAD4O15165 306 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 AIREO43918 545 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 MGMTP16455 207 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 RAB3BP20337 219 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 LMO1P25800 156 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 EFNB2P52799 333 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 ERVFRD-1P60508 538 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 PAX8Q06710 450 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 ZNF273Q14593 569 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 TAF9Q16594 264 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 CTF1Q16619 201 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 GLT8D1Q68CQ7 371 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 GLCCI1Q86VQ1 547 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 OSR2Q8N2R0 312 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 ZNF561Q8N587 486 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 OR51D1Q8NGF3 324 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 OR6M1Q8NGM8 313 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 PLPPR1Q8TBJ4 325 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 RAB40AQ8WXH6 277 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 H1FXQ92522 213 aaKnown RBP8.07□□□□□ -1.12
CLK3-208ENST00000562626 DYRK2Q92630 601 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 CPNE2Q96FN4 548 aaPredicted RBP8.07□□□□□ -1.12
CLK3-208ENST00000562626 COQ2Q96H96 371 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 Q96M66 194 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 NUDT16L1Q9BRJ7 211 aaKnown RBP8.07□□□□□ -1.12
CLK3-208ENST00000562626 SLITRK2Q9H156 845 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 PPA2Q9H2U2 334 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 PLGRKTQ9HBL7 147 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 OR5V1Q9UGF6 321 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 SOX21Q9Y651 276 aaPredicted RBP8.07□□□□□ -1.12
CLK3-208ENST00000562626 V9GY05 133 aa8.07□□□□□ -1.12
CLK3-208ENST00000562626 KIR2DS1A0A191URI9 304 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 TMEM272A0A1B0GTI8 110 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 IFITM5A6NNB3 132 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 CRTAPO75718 401 aaPredicted RBP8.06□□□□□ -1.12
CLK3-208ENST00000562626 MPIG6BO95866 241 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 CHRM2P08172 466 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 MMP9P14780 707 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 ZNF44P15621 663 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 CCL3L1P16619 93 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 MYL9P24844 172 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 CFPP27918 469 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 RPS19P39019 145 aaKnown RBP8.06□□□□□ -1.12
CLK3-208ENST00000562626 NPY4RP50391 375 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 CAPZA1P52907 286 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 VBP1P61758 197 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 EDDM3AQ14507 147 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 IL13RA2Q14627 380 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 ATXN7L3Q14CW9 347 aaPredicted RBP8.06□□□□□ -1.12
CLK3-208ENST00000562626 RAB11BQ15907 218 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 C2orf76Q3KRA6 126 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 LRRC10Q5BKY1 277 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 NHLRC3Q5JS37 347 aa8.06□□□□□ -1.12
CLK3-208ENST00000562626 KLF17Q5JT82 389 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms