RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GABRR1P24046 479 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 SDC2P34741 201 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 KCNJ3P48549 501 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 SEC61A1P61619 476 aaKnown RBP8.38□□□□□ -1.07
USP3-216ENST00000559873 LCN2P80188 198 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 COL10A1Q03692 680 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 MXD1Q05195 221 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 GDPD3Q7L5L3 318 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 OR2W3Q7Z3T1 314 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 C1QL2Q7Z5L3 287 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 ANKRD13BQ86YJ7 626 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 OR8H2Q8N162 312 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 CD177Q8N6Q3 437 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 RAB2BQ8WUD1 216 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 H1FXQ92522 213 aaKnown RBP8.38□□□□□ -1.07
USP3-216ENST00000559873 SNX22Q96L94 193 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 DMRTB1Q96MA1 342 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 BCL7BQ9BQE9 202 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 URM1Q9BTM9 101 aaKnown RBP8.38□□□□□ -1.07
USP3-216ENST00000559873 CENPOQ9BU64 300 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 SELENOIQ9C0D9 397 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 IL36RNQ9UBH0 155 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 POLR3KQ9Y2Y1 108 aaPredicted RBP8.38□□□□□ -1.07
USP3-216ENST00000559873 MAB21L2Q9Y586 359 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 MALRD1Q5VYJ5 2156 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 ZNF469Q96JG9 3925 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 LOC105371242A0A075B767 164 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PQ09 198 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 SHISA3A0PJX4 238 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 A8MV72 311 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 KIAA1324LA8MWY0 1029 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 K7N7A8 449 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 SIRPB1O00241 398 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 MGST3O14880 152 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 PHF1O43189 567 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 MPIG6BO95866 241 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 OR2H2O95918 312 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 IL1AP01583 271 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 TK1P04183 234 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 CALCBP10092 127 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 HNF1AP20823 631 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 DUSP1P28562 367 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 SERPINB10P48595 397 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 CEBPDP49716 269 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 SCAND1P57086 179 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 OR10A3P58181 314 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 LSM3P62310 102 aaKnown RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 SCN1BQ07699 218 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 RBM39Q14498 530 aaKnown RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 P2RY14Q15391 338 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 GRK1Q15835 563 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 PIGYQ3MUY2 71 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 PAN3Q58A45 887 aaKnown RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 HES5Q5TA89 166 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 DCAF12L2Q5VW00 463 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 GPR107Q5VW38 600 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 SFXN4Q6P4A7 337 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 ZNF841Q6ZN19 808 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 USP43Q70EL4 1123 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 CLVS1Q8IUQ0 354 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 CMTM4Q8IZR5 234 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 ZNRF1Q8ND25 227 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 RAB40AQ8WXH6 277 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 FAM46BQ96A09 425 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 FAM3DQ96BQ1 224 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 C1orf147Q96MC9 270 aaPredicted RBP8.37□□□□□ -1.07
USP3-216ENST00000559873 GFI1Q99684 422 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 IFT22Q9H7X7 185 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 YAE1D1Q9NRH1 226 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 HIF1ANQ9NWT6 349 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 FBLN5Q9UBX5 448 aa8.37□□□□□ -1.07
USP3-216ENST00000559873 IGHV2-70DA0A0C4DH43 119 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 A0A1B0GW55 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 GEMIN2O14893 280 aaKnown RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 ZNF737O75373 536 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 CSN2P05814 226 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L2P0CJ85 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L3P0CJ86 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L4P0CJ87 422 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L5P0CJ88 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L6P0CJ89 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L7P0CJ90 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 VSIG8P0DPA2 414 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 SELLP14151 372 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 AMY2BP19961 511 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 LMO1P25800 156 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 ZFP36P26651 326 aaKnown RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 TMBIM6P55061 237 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 RPS27AP62979 156 aaKnown RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 TAF9Q16594 264 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 ATAD3CQ5T2N8 411 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4L9Q6RFH8 374 aaPredicted RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 BTN2A1Q7KYR7 527 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 NEK7Q8TDX7 302 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 SLC25A28Q96A46 364 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 PTX4Q96A99 478 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 Q96M66 194 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 NUDT16L1Q9BRJ7 211 aaKnown RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 DCTN5Q9BTE1 182 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 LIN7BQ9HAP6 207 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms