RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 POM121CA8CG34 1229 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 XPNPEP2O43895 674 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 GPR137BO60478 399 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 NDUFA7O95182 113 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 OCM2P0CE71 109 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 OCMP0CE72 109 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF728P0DKX0 622 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 TMEM225BP0DP42 221 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 MYL12AP19105 171 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 OMGP23515 440 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 LMO1P25800 156 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 OR3A1P47881 315 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 SNU13P55769 128 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 EDDM3BP56851 147 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 RPS11P62280 158 aaKnown RBP eCLIP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 MEF2CQ06413 473 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 GRK1Q15835 563 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 Q6P435 159 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 GDPD3Q7L5L3 318 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 TPRX1Q8N7U7 411 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 BEND2Q8NDZ0 799 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 DYRK2Q92630 601 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 GHSRQ92847 366 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 SMIM19Q96E16 107 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF184Q99676 751 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 CHST6Q9GZX3 395 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 DPAGT1Q9H3H5 408 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 HEXA-AS1Q9H8Q6 139 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 NEK6Q9HC98 313 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 FKBP14Q9NWM8 211 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 TAS2R4Q9NYW5 299 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 CNOT2Q9NZN8 540 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 GSTK1Q9Y2Q3 226 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF281Q9Y2X9 895 aa8.36□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A0G2JK05 382 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 TRBV5-5A0A0J9YX44 114 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 hCG_1809904A0A1W2PP81 198 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PPE2 198 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PR64 198 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PRV1 198 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 FAM90A8PA6NJQ4 464 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 SIRPB1O00241 398 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 GABRPO00591 440 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 SH2D1BO14796 132 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 MGST3O14880 152 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 OR2H2O95918 312 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 RBP4P02753 201 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ALDOBP05062 364 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 HCKP08631 526 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 RAB3AP20336 220 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 GABRR1P24046 479 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 COX7A1P24310 79 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ERP29P30040 261 aaKnown RBP8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 C21orf33P30042 268 aaPredicted RBP8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 BMXP51813 675 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 RAG2P55895 527 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 RPL15P61313 204 aaKnown RBP8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 EDDM3AQ14507 147 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ELP2Q6IA86 826 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ASCL4Q6XD76 172 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF782Q6ZMW2 699 aaPredicted RBP8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 Q8NFD4 153 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 PXT1Q8NFP0 134 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 OR13C5Q8NGS8 318 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 TMEM106AQ96A25 262 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 ORAI1Q96D31 301 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 PGLYRP3Q96LB9 341 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 MEGF9Q9H1U4 602 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 VCXQ9H320 206 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 EXOSC4Q9NPD3 245 aaKnown RBP8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 GLS2Q9UI32 602 aa8.35□□□□□ -1.07
CCDC88C-206ENST00000553437 hADV38S2A0JD32 116 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 ODF3BA8MYP8 253 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 SLC33A1O00400 549 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 GPX5O75715 221 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 PAHP00439 452 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 CRYBA1P05813 215 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 CD2P06729 351 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 IGHV1-8P0DP01 117 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 IGFBP3P17936 291 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 PAX6P26367 422 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 MTNR1BP49286 362 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 P2RX3P56373 397 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 MED21Q13503 144 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 LDLRAD2Q5SZI1 272 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 SHISA2Q6UWI4 295 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 TREML4Q6UXN2 200 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 GDPGP1Q6ZNW5 385 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 AHSA2Q719I0 299 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 LHFPL4Q7Z7J7 247 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 DYNAPQ8N1N2 210 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 ZFP41Q8N8Y5 198 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 BPIFB6Q8NFQ5 453 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 OR11H6Q8NGC7 330 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 OR4F5Q8NH21 305 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 PIFOQ8TCI5 191 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 ZNF714Q96N38 554 aa8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 NR1H4Q96RI1 486 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 NKX3-1Q99801 234 aaPredicted RBP8.34□□□□□ -1.07
CCDC88C-206ENST00000553437 SLITRK2Q9H156 845 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms