RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CDC40O60508 579 aaKnown RBP eCLIP7□□□□□ -1.29
PDLIM5-221ENST00000542407 NPIPB7O75200 414 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 CSTBP04080 98 aaKnown RBP7□□□□□ -1.29
PDLIM5-221ENST00000542407 UMODP07911 640 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 OR8U9P0C7N5 309 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF84P51523 738 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 FBXW4P57775 412 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 TAS2R19P59542 299 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 MEF2DQ14814 521 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 PCOLCEQ15113 449 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 RAB11BQ15907 218 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 KHDC3LQ587J8 217 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 HIST2H3AQ71DI3 136 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 WFDC8Q8IUA0 241 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 CLEC1AQ8NC01 280 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 OR4S1Q8NGB4 309 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 OR13C8Q8NGS7 320 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 Q96M85 177 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 TP53RKQ96S44 253 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 TPPP3Q9BW30 176 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 ULBP3Q9BZM4 244 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 ARRDC1-AS1Q9H2J1 176 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 C1orf198Q9H425 327 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 YAE1D1Q9NRH1 226 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 DOK5Q9P104 306 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 AMDHD2Q9Y303 409 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 B3GALT1Q9Y5Z6 326 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 ETV7Q9Y603 341 aa7□□□□□ -1.29
PDLIM5-221ENST00000542407 TRAV8-7A0A075B6U6 113 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 TRBV7-9A0A0J9YWB2 115 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR5H15A6NDH6 313 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 HELTA6NFD8 242 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 MSGN1A6NI15 193 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR5H1A6NKK0 313 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RPL36A-HNRNPH2H7BZ11 118 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 KLF7O75840 302 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF432O94892 652 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 WNT11O96014 354 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CYB5AP00167 134 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 FABP4P15090 132 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 GNRHRP30968 328 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 PTGDSP41222 190 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RIPPLY3P57055 190 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 PSG3Q16557 428 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 NUFIP2Q7Z417 695 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 YRDCQ86U90 279 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 EXD3Q8N9H8 876 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ZSCAN4Q8NAM6 433 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR2T27Q8NH04 317 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ORAOV1Q8WV07 137 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RPUSD4Q96CM3 377 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 LPAR4Q99677 370 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC6A7Q99884 636 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SLC25A21Q9BQT8 299 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CST11Q9H112 138 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CYTL1Q9NRR1 136 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 TIMM10BQ9Y5J6 103 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 V9GYS6 101 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF736B4DX44 427 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 C9J4A7 227 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SIVA1O15304 175 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 PGCP20142 388 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ANOS1P23352 680 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CXCR1P25024 350 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 MPZP25189 248 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RAB7AP51149 207 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 DVL1P1P54792 670 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 JOSD1Q15040 202 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 TMEM177Q53S58 311 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 Q6ZRG5 221 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 LINC01551Q86U37 167 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 C1QL4Q86Z23 238 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 PAQR4Q8N4S7 273 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ZNF563Q8TA94 476 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RHBDD1Q8TEB9 315 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 PINX1Q96BK5 328 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 VSIG4Q9Y279 399 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 URGCP-MRPS24S4R325 110 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SEC16AO15027 2179 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 TMEM235A6NFC5 223 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 F8VVB4 439 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 F8VWA3 439 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ETV2O00321 342 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR2C1O95371 312 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR13C7P0DN81 318 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SCGB1A1P11684 91 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CCKBRP32239 447 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 RAB9AP51151 201 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 COL5A1-AS1Q5SY13 56 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 C1QL3Q5VWW1 255 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ANKRD16Q6P6B7 361 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 SYS1Q8N2H4 156 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR5AK2Q8NH90 309 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 ASB17Q8WXJ9 295 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 LOXL4Q96JB6 756 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 OR2V2Q96R30 315 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 NMNAT3Q96T66 252 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 TMED7Q9Y3B3 224 aa6.99□□□□□ -1.29
PDLIM5-221ENST00000542407 CFAP54Q96N23 3096 aa6.98□□□□□ -1.29
PDLIM5-221ENST00000542407 IGHV1-45A0A0A0MS14 117 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms