RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	NME2	P22392	152 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	FKBP2	P26885	142 aa	Known RBP	12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	MAGEA5	P43359	124 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	OR2B8P	P59922	312 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	VAX1	Q5SQQ9	334 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	CALHM1	Q8IU99	346 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	CDC6	Q99741	560 aa		12.8	□□□□□ -0.36
DDX55-209	ENST00000542286	hCG_1809904	A0A1W2PP81	198 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286		A0A1W2PR64	198 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286		A0A1W2PRV1	198 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	AP4M1	O00189	453 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	MED6	O75586	246 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	CSTB	P04080	98 aa	Known RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	SNRNP70	P08621	437 aa	Known RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	FCGR3A	P08637	254 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	EDN3	P14138	238 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	MPZ	P25189	248 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	GSK3A	P49840	483 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	ZNF133	P52736	654 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RAB32	Q13637	225 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RAB35	Q15286	201 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286		Q3ZCU0	254 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	NCMAP	Q5T1S8	102 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	ADAM5	Q6NVV9	412 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	DBX2	Q6ZNG2	339 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	FBXL14	Q8N1E6	418 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	ADAMTS17	Q8TE56	1095 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	PP6455	Q8WZ26	134 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	KIRREL1	Q96J84	757 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	GPHA2	Q96T91	129 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	OR2H1	Q9GZK4	316 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	GPR35	Q9HC97	309 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	TIMM10B	Q9Y5J6	103 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	COL27A1	Q8IZC6	1860 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286		A0A1W2PPH5	198 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	LRP3	O75074	770 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	SCGN	O76038	276 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	SFT2D2	O95562	160 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	SELL	P14151	372 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	DAO	P14920	347 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RPS2	P15880	293 aa	Known RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RAB5A	P20339	215 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	NPBWR2	P48146	333 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RAB2A	P61019	212 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	DEFA6	Q01524	100 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	RPUSD3	Q6P087	351 aa	Known RBP	12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	TUSC5	Q8IXB3	177 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	FNDC9	Q8TBE3	224 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286		Q96M66	194 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	SLC7A10	Q9NS82	523 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	ANAPC10	Q9UM13	185 aa		12.79	□□□□□ -0.36
DDX55-209	ENST00000542286	HSPB6	O14558	160 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	PPIH	O43447	177 aa	Known RBP	12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	NEURL1	O76050	574 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	RNF224	P0DH78	156 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	NR2C1	P13056	603 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	ITGA3	P26006	1051 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	FIP1L1	Q6UN15	594 aa	Known RBP	12.78	□□□□□ -0.36
DDX55-209	ENST00000542286		Q6ZPA2	131 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	LHFPL1	Q86WI0	220 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	ARRDC1	Q8N5I2	433 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	SECTM1	Q8WVN6	248 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	EMG1	Q92979	244 aa	Known RBP	12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	IP6K3	Q96PC2	410 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	IL36RN	Q9UBH0	155 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	GVINP1	Q7Z2Y8	2422 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	ST8SIA5	O15466	376 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	GLP1R	P43220	463 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	FAM3A	P98173	230 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	DHRS13	Q6UX07	377 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	BORCS8	Q96FH0	119 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	TREM2	Q9NZC2	230 aa		12.78	□□□□□ -0.36
DDX55-209	ENST00000542286	C7orf77	A4D0Y5	90 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	GJE1	A6NN92	205 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	FAM157A	C9JC47	383 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	FBXO24	O75426	580 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	NRAS	P01111	189 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	ACP1	P24666	158 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	FPR2	P25090	351 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	ID4	P47928	161 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	GFRA1	P56159	465 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	PLCXD3	Q63HM9	321 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	NMES1	Q9C002	83 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	TOLLIP	Q9H0E2	274 aa		12.77	□□□□□ -0.36
DDX55-209	ENST00000542286	OR6C6	A6NF89	314 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	ZNF850	A8MQ14	1090 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286		B4E171	279 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	SERPINA7	P05543	415 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	DUSP1	P28562	367 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	PMEL	P40967	661 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	TSPAN7	P41732	249 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	DVL1P1	P54792	670 aa	Predicted RBP	12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	SSPN	Q14714	243 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	PHLDA2	Q53GA4	152 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	AWAT1	Q58HT5	328 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	FAM24B	Q8N5W8	94 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	OR10AD1	Q8NGE0	317 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	TAAR9	Q96RI9	348 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	PRRG4	Q9BZD6	226 aa		12.77	□□□□□ -0.37
DDX55-209	ENST00000542286	IGHV3-64D	A0A0J9YX35	117 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms