RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZNF728P0DKX0 622 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 ZNF44P15621 663 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 JUNBP17275 347 aaPredicted RBP9.35□□□□□ -0.91
VCAN-212ENST00000515397 RAB3AP20336 220 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 OR3A1P47881 315 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 GLIPR1P48060 266 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 RAB13P51153 203 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 AQP4P55087 323 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 RAG2P55895 527 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 SLC34A1Q06495 639 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 AESQ08117 197 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 MRPL28Q13084 256 aaKnown RBP9.35□□□□□ -0.91
VCAN-212ENST00000515397 ZNF146Q15072 292 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 Q6P435 159 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 LDLRAD3Q86YD5 345 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 Q8IYB0 196 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 DYNAPQ8N1N2 210 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 STX19Q8N4C7 294 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 ZNF485Q8NCK3 441 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 TNFAIP8L1Q8WVP5 186 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 TFAP2CQ92754 450 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 ZNF747Q9BV97 191 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 DCLRE1BQ9H816 532 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 HEXA-AS1Q9H8Q6 139 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 EXOSC4Q9NPD3 245 aaKnown RBP9.35□□□□□ -0.91
VCAN-212ENST00000515397 C8orf4Q9NR00 106 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 PSORS1C1Q9UIG5 152 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 ING4Q9UNL4 249 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 ZNF281Q9Y2X9 895 aa9.35□□□□□ -0.91
VCAN-212ENST00000515397 A0A0G2JK05 382 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 FAM172BPA6NC97 362 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 MAGEA13PA6NCF6 341 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 EFCAB10A6NFE3 127 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 C17orf98A8MV24 154 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 H3BUX3 64 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 GABRPO00591 440 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 DEGS1O15121 323 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 OR3A4PP47883 348 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 KRTAP10-3P60369 221 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 DYNC1I2Q13409 638 aaKnown RBP9.34□□□□□ -0.91
VCAN-212ENST00000515397 CCDC58Q4VC31 144 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 LDLRAD2Q5SZI1 272 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 HIST2H2BDQ6DRA6 164 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 TRAPPC6BQ86SZ2 158 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 TMEM86BQ8N661 226 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 ZSCAN4Q8NAM6 433 aaPredicted RBP9.34□□□□□ -0.91
VCAN-212ENST00000515397 RPS4Y2Q8TD47 263 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 FBLIM1Q8WUP2 373 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 TMEM106AQ96A25 262 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 SMIM19Q96E16 107 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 SSX3Q99909 188 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 FAM192AQ9GZU8 254 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 DPAGT1Q9H3H5 408 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 GLS2Q9UI32 602 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 POMT1Q9Y6A1 747 aa9.34□□□□□ -0.91
VCAN-212ENST00000515397 TRAV8-7A0A075B6U6 113 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 A0A1W2PPH5 198 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 hADV38S2A0JD32 116 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 IRGMA1A4Y4 181 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 SLC33A1O00400 549 aaPredicted RBP9.33□□□□□ -0.92
VCAN-212ENST00000515397 MGST3O14880 152 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 MAGEB3O15480 346 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 HTR3BO95264 441 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 ARG1P05089 322 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 IGHV1-8P0DP01 117 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 P2RX3P56373 397 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 LGALS4P56470 323 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 RPS11P62280 158 aaKnown RBP eCLIP9.33□□□□□ -0.92
VCAN-212ENST00000515397 ACSM1Q08AH1 577 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 INSL4Q14641 139 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 ATXN7L3Q14CW9 347 aaPredicted RBP9.33□□□□□ -0.92
VCAN-212ENST00000515397 PIGYQ3MUY2 71 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 UTF1Q5T230 341 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 PRAMEF5Q5TYX0 476 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 DMKNQ6E0U4 476 aaPredicted RBP9.33□□□□□ -0.92
VCAN-212ENST00000515397 ZNF529Q6P280 563 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 OR52N1Q8NH53 320 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 PPP1R35Q8TAP8 253 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 DYRK2Q92630 601 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 ZNF714Q96N38 554 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 SLITRK2Q9H156 845 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 SIGLEC9Q9Y336 463 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 HSPE1-MOB4S4R3N1 261 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 PKD1L1Q8TDX9 2849 aa9.33□□□□□ -0.92
VCAN-212ENST00000515397 TRAV39A0A0B4J263 110 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 TRBV5-5A0A0J9YX44 114 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 A0A1W2PP11 408 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 hCG_1809904A0A1W2PP81 198 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 A0A1W2PPE2 198 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 A0A1W2PR64 198 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 A0A1W2PRV1 198 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 BTBD17A6NE02 478 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 H0YJX3 145 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 ALX3O95076 343 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 CD2P06729 351 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 CELP19835 753 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 GDNFP39905 211 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 PTGFRP43088 359 aa9.32□□□□□ -0.92
VCAN-212ENST00000515397 MEF2CQ06413 473 aaPredicted RBP9.32□□□□□ -0.92
VCAN-212ENST00000515397 MED21Q13503 144 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms