RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SERTM1A2A2V5 107 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 NPIPB6E9PJ23 425 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CD1AP06126 327 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 KLRB1Q12918 225 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 ERV3-1Q14264 604 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF124Q15973 351 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 LRRC10Q5BKY1 277 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 SH2D5Q6ZV89 423 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 TCF23Q7RTU1 214 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 SPNS2Q8IVW8 549 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 OR2Y1Q8NGV0 311 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 OR13G1Q8NGZ3 307 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 EMC6Q9BV81 110 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 C1QTNF9BB2RNN3 333 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 ZFPL1O95159 310 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 FGF8P55075 233 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CLDN2P57739 230 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 DEFB133Q30KQ1 61 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 WDR38Q5JTN6 314 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 SARAFQ96BY9 339 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 SPACA5Q96QH8 159 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 MYOZ1Q9NP98 299 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 IL36GQ9NZH8 169 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CES1P1Q9UKY3 287 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CXorf51AA0A1B0GTR3 108 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 MBLAC1A4D2B0 266 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 C5orf49A4QMS7 147 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 DNAL4O96015 105 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 FAHP16930 419 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 MRGPREQ86SM8 312 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 OR5A1Q8NGJ0 315 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 STARD10Q9Y365 291 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 LMO7Q8WWI1 1683 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CEACAM6P40199 344 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 GNG10P50151 68 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 LCN2P80188 198 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 ISXQ2M1V0 245 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 LRP10Q7Z4F1 713 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 JKAMPQ9P055 326 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 MTCH2Q9Y6C9 303 aa9.99□□□□□ -0.81
LIMCH1-217ENST00000512946 CYR61O00622 381 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 CEACAM3P40198 252 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 NOVP48745 357 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MVDP53602 400 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 INSM1Q01101 510 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 RELQ04864 619 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TMEM215Q68D42 235 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 SSX8Q7RTT4 187 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 KMT5CQ86Y97 462 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MUC15Q8N387 334 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF775Q96BV0 537 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 NCOR1P1Q9H4R4 102 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 NDUFB3O43676 98 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 CHST1O43916 411 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 CXCL3P19876 107 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 DPTQ07507 201 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MYBPHQ13203 477 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TMEM211Q6ICI0 200 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TMEM45BQ96B21 275 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 KCNE5Q9UJ90 142 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 CACNA1FO60840 1977 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MYH11P35749 1972 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 FCGR3BO75015 233 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 EDN3P14138 238 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MUC1P15941 1255 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 PMELP40967 661 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 CCL14Q16627 93 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 RGS7BPQ6MZT1 257 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 SHISA6Q6ZSJ9 500 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 LRRC75AQ8NAA5 344 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TOX2Q96NM4 488 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 SIGMAR1Q99720 223 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MS4A7Q9GZW8 240 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 PARLQ9H300 379 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 DNAJC4Q9NNZ3 241 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 LINC01553A4QN01 128 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 PLA2G10O15496 165 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 ATP6V0CP27449 155 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 RAB9AP51151 201 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 SLC35B1P78383 322 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 DMRTA1Q5VZB9 504 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 GBGT1Q8N5D6 347 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TTC9CQ8N5M4 171 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TEX29Q8N6K0 151 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 OR8G5Q8NG78 346 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 OR4P4Q8NGL7 312 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 HMGCLL1Q8TB92 370 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 RND1Q92730 232 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 ALKBH7Q9BT30 221 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 PSMG3Q9BT73 122 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TXNRD2Q9NNW7 524 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 MPC1Q9Y5U8 109 aa9.98□□□□□ -0.81
LIMCH1-217ENST00000512946 TRAV9-1A0A075B6T8 112 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 NPIPB8E9PQR5 432 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 NPIPB7O75200 414 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 KBTBD11O94819 623 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 AMY1AP04745 511 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 MEF2BQ02080 365 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 FAM53BQ14153 422 aa9.97□□□□□ -0.81
LIMCH1-217ENST00000512946 GAB4Q2WGN9 574 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms