RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DUX4L2P0CJ85 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4L3P0CJ86 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4L4P0CJ87 422 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4L5P0CJ88 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4L6P0CJ89 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DUX4L7P0CJ90 424 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C1GALT1C1LP0DN25 315 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 THRBP10828 461 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ANXA3P12429 323 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 RAB5AP20339 215 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FGF7P21781 194 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CRHBPP24387 322 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CYP2F1P24903 491 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CXCR1P25024 350 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 STOMP27105 288 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GABRR2P28476 465 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SDC4P31431 198 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 IL2RGP31785 369 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 APLNRP35414 380 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DLSTP36957 453 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 COILP38432 576 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 P2RY2P41231 377 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FRKP42685 505 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GCLMP48507 274 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CSNK1A1P48729 337 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL19P49406 292 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NUDT2P50583 147 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 RAB7AP51149 207 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AKR1C2P52895 323 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 HCCSP53701 268 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CRISP1P54107 249 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 WNT4P56705 351 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CLDN18P56856 261 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GABARAPL2P60520 117 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CKS1BP61024 79 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ST8SIA6P61647 398 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PPP3R1P63098 170 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ADARB1P78563 741 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DCDP81605 110 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MRPS6P82932 125 aaKnown RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SPIBQ01892 262 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 EMX1Q04741 257 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CHRNB3Q05901 458 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AESQ08117 197 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ST3GAL4Q11206 333 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SPHARQ15513 63 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TGIF1Q15583 401 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CDKN3Q16667 212 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 HAGHQ16775 308 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CCSMST1Q4G0I0 132 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PYCR3Q53H96 274 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PYDC2Q56P42 97 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OCIAD2Q56VL3 154 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PIGGQ5H8A4 983 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 COL5A1-AS1Q5SY13 56 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 LINC00242Q5T6M2 205 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 LCE3AQ5TA76 89 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CARD17Q5XLA6 110 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PLCXD3Q63HM9 321 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC22A10Q63ZE4 541 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SAXO2Q658L1 398 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CAPN13Q6MZZ7 669 aaPredicted RBP1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM220Q6QAJ8 160 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ALKAL2Q6UX46 152 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 DRAM2Q6UX65 266 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 NHLRC1Q6VVB1 395 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SIGLEC15Q6ZMC9 328 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM179Q6ZVK1 233 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FAM220AQ7Z4H9 259 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35E3Q7Z769 313 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF546Q86UE3 836 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC26A11Q86WA9 606 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CRLF3Q8IUI8 442 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TRAPPC5Q8IUR0 188 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 MFSD6LQ8IWD5 586 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 AQP12AQ8IXF9 295 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FAM58AQ8N1B3 248 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 SLC22A18ASQ8N1D0 253 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 KDM8Q8N371 416 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF664Q8N3J9 261 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 FTMTQ8N4E7 242 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 JAGN1Q8N5M9 183 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 COMMD1Q8N668 190 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 LRRC52Q8N7C0 313 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 GVQW1Q8N7I0 195 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CLDN22Q8N7P3 220 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 C15orf54Q8N8G6 183 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 ZFP41Q8N8Y5 198 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PRELID2Q8N945 189 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 CCNYQ8ND76 341 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM161BQ8NDZ6 487 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM185AQ8NFB2 350 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 PXT1Q8NFP0 134 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 STEAP2Q8NFT2 490 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR2M7Q8NG81 312 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR2Z1Q8NG97 314 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR4C5Q8NGB2 326 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR10AD1Q8NGE0 317 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR56B1Q8NGI3 324 aa1.63□□□□□ -2.15
HMGB1-208ENST00000490788 OR6T1Q8NGN1 323 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms