RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 GFI1BQ5VTD9 330 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 C10orf35Q96D05 121 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 GNPNAT1Q96EK6 184 aaPredicted RBP11.57□□□□□ -0.56
USP40-214ENST00000483519 FAAP24Q9BTP7 215 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 VN1R1Q9GZP7 353 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 TTC28Q96AY4 2481 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 THADAQ6YHU6 1953 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 E9PLN8 166 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 TRAF3IP2O43734 574 aaPredicted RBP11.57□□□□□ -0.56
USP40-214ENST00000483519 QDPRP09417 244 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 OPRM1P35372 400 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 FBXW4P57775 412 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 RNF4P78317 190 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 ODF1Q14990 250 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 TMEM92Q6UXU6 159 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 CCDC54Q8NEL0 328 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 OR5R1Q8NH85 324 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 CLDN23Q96B33 292 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 METTL9Q9H1A3 318 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 PLEKHF2Q9H8W4 249 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 PIGLQ9Y2B2 252 aa11.57□□□□□ -0.56
USP40-214ENST00000483519 FAM24AA6NFZ4 105 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 SHISA7A6NL88 538 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 SHISA8B8ZZ34 492 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 MSTNO14793 375 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 TRGC1P0CF51 173 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 RRADP55042 308 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 AKR1C8PQ5T2L2 129 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 SLC35G3Q8N808 338 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 FAM210BQ96KR6 192 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 MRGPRX4Q96LA9 322 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 ABHD14AQ9BUJ0 271 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 DUSP15Q9H1R2 295 aaPredicted RBP11.56□□□□□ -0.56
USP40-214ENST00000483519 GPR27Q9NS67 375 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 FAM86C1Q9NVL1 165 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 CYP8B1Q9UNU6 501 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 CCDC187A0A096LP49 1063 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 GLI4P10075 376 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 GUCA1AP43080 201 aaPredicted RBP11.56□□□□□ -0.56
USP40-214ENST00000483519 UCP3P55916 312 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 HLA-DRB3P79483 266 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 TLE4Q04727 773 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 PACRGQ96M98 296 aaPredicted RBP11.56□□□□□ -0.56
USP40-214ENST00000483519 SPIN2AQ99865 258 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 SPIN2BQ9BPZ2 258 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 PCED1AQ9H1Q7 454 aa11.56□□□□□ -0.56
USP40-214ENST00000483519 FOXD3Q9UJU5 478 aaPredicted RBP11.56□□□□□ -0.56
USP40-214ENST00000483519 RP1P56715 2156 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 IGSF23A1L1A6 192 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 SMCO3A2RU48 225 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 C5orf63A6NC05 138 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 ZNF732B4DXR9 585 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 ETV2O00321 342 aaPredicted RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 GABRG2P18507 467 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 NKX2-1P43699 371 aaPredicted RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 LSM6P62312 80 aaKnown RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 RPL23AP62750 156 aaKnown RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 SSX2Q16385 188 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 KIAA0895LQ68EN5 471 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 DPPA3Q6W0C5 159 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 PLPP5Q8NEB5 264 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 OR10AD1Q8NGE0 317 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 MOB3AQ96BX8 217 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 SSX3Q99909 188 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 C11orf1Q9H5F2 150 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 SLC7A11Q9UPY5 501 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 SLCO1B1Q9Y6L6 691 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 TECTAO75443 2155 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 F5H5K5 113 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 H3BMH7 237 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 DBHP09172 617 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 NR2C1P13056 603 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 ARL4DP49703 201 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 MTCP1P56278 107 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 VAMP2P63027 116 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 ZNF124Q15973 351 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 TAF9Q16594 264 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 HIST3H3Q16695 136 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 MEX3BQ6ZN04 569 aaKnown RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 LANCL3Q6ZV70 420 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 D2HGDHQ8N465 521 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 OR10G4Q8NGN3 311 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 CLDND2Q8NHS1 167 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 FRZBQ92765 325 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 KLHDC7BQ96G42 594 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 ZNF286AQ9HBT8 521 aa11.55□□□□□ -0.56
USP40-214ENST00000483519 LYRM2Q9NU23 88 aaPredicted RBP11.55□□□□□ -0.56
USP40-214ENST00000483519 TLX3O43711 291 aaPredicted RBP11.54□□□□□ -0.56
USP40-214ENST00000483519 FOLR1P15328 257 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 HERV-K104P61576 105 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 PNRC1Q12796 327 aaPredicted RBP11.54□□□□□ -0.56
USP40-214ENST00000483519 CHAF1BQ13112 559 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 C16orf47Q6ZP98 133 aaPredicted RBP11.54□□□□□ -0.56
USP40-214ENST00000483519 DPPA2Q7Z7J5 298 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 GJC3Q8NFK1 279 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 ABHD14BQ96IU4 210 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 OXGR1Q96P68 337 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 HIPK2Q9H2X6 1198 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 PRO1933Q9H354 126 aa11.54□□□□□ -0.56
USP40-214ENST00000483519 TMEM242Q9NWH2 141 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms