RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 C5orf63A6NC05 138 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 TRDCB7Z8K6 153 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 CLDN34H7C241 214 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 CEACAM6P40199 344 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 ASCL1P50553 236 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 RPL23AP62750 156 aaKnown RBP17.15■□□□□ 0.34
SDF4-205ENST00000465727 TAF9Q16594 264 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 PLPPR5Q32ZL2 321 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 PRSS58Q8IYP2 241 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 TMEM171Q8WVE6 324 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 FRZBQ92765 325 aa17.15■□□□□ 0.34
SDF4-205ENST00000465727 LOC102725191A0A1B0GVB3 256 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 MSR1P21757 451 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 MTCP1P56278 107 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 SSX2Q16385 188 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 PDZD11Q5EBL8 140 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 SSX3Q99909 188 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 DKKL1Q9UK85 242 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 TRBV24-1A0A075B6N3 115 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 C3orf85A0A1B0GTC6 90 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 SHISA8B8ZZ34 492 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 FOLR1P15328 257 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 OTX1P32242 354 aaPredicted RBP17.14■□□□□ 0.33
SDF4-205ENST00000465727 HERV-K104P61576 105 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 VAMP2P63027 116 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 H3F3AP84243 136 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 OR8B8Q15620 311 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 ZNF100Q8IYN0 542 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 OR5C1Q8NGR4 320 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 RNASEH2CQ8TDP1 164 aaKnown RBP17.14■□□□□ 0.33
SDF4-205ENST00000465727 TP53RKQ96S44 253 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 TMEM222Q9H0R3 208 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 SLC7A11Q9UPY5 501 aa17.14■□□□□ 0.33
SDF4-205ENST00000465727 F5H5K5 113 aa17.13■□□□□ 0.33
SDF4-205ENST00000465727 DVL1O14640 695 aa17.13■□□□□ 0.33
SDF4-205ENST00000465727 CYB5R3P00387 301 aaPredicted RBP17.13■□□□□ 0.33
SDF4-205ENST00000465727 NOVA1P51513 510 aaKnown RBP17.13■□□□□ 0.33
SDF4-205ENST00000465727 FOXO1Q12778 655 aa17.13■□□□□ 0.33
SDF4-205ENST00000465727 LANCL3Q6ZV70 420 aa17.13■□□□□ 0.33
SDF4-205ENST00000465727 HIST1H2BLQ99880 126 aa17.13■□□□□ 0.33
SDF4-205ENST00000465727 IGLV3-32A0A0A0MS00 114 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 LOC102723971A0A1B0GUV8 181 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 DUXBA0A1W2PPF3 345 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 NKX2-6A6NCS4 301 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 MPPED1O15442 326 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 PNLIPP16233 465 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 FGF7P21781 194 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 CD200P41217 278 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 SPCS3P61009 180 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 CMTM1Q8IZ96 169 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 OR11L1Q8NGX0 322 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 POC1BQ8TC44 478 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 TMEM56Q96MV1 263 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 NOL4LQ96MY1 436 aaPredicted RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 TP53TG5Q9Y2B4 290 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 TMEM56-RWDD3S4R434 201 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 USP34Q70CQ2 3546 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 TRANK1O15050 2925 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 NCOA6Q14686 2063 aaPredicted RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 XIRP2A4UGR9 3374 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 C9J4A7 227 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 PROB1E7EW31 1015 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 TERTO14746 1132 aaKnown RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 PHOX2AO14813 284 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 GLI4P10075 376 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 IL2RGP31785 369 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 ARL4DP49703 201 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 JOSD1Q15040 202 aaPredicted RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 OR8G1Q15617 311 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 MEX3BQ6ZN04 569 aaKnown RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 C16orf47Q6ZP98 133 aaPredicted RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 CARFQ8N187 725 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 OR1L3Q8NH93 324 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 RAB24Q969Q5 203 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 CDCA3Q99618 268 aaPredicted RBP17.12■□□□□ 0.33
SDF4-205ENST00000465727 KLRF1Q9NZS2 232 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 PCDH15Q96QU1 1955 aa17.12■□□□□ 0.33
SDF4-205ENST00000465727 A0A1B0GU03 582 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 A0A1B0GX78 115 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 CLEC18AA5D8T8 446 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 GEMIN2O14893 280 aaKnown RBP17.11■□□□□ 0.33
SDF4-205ENST00000465727 OPN1MWP04001 364 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 OPN1MW2P0DN77 364 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 OPN1MW3P0DN78 364 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 HIST1H3AP68431 136 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 CNN3Q15417 329 aaKnown RBP17.11■□□□□ 0.33
SDF4-205ENST00000465727 ASCL4Q6XD76 172 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 BEND4Q6ZU67 534 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 TMEM183AQ8IXX5 376 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 CLEC18CQ8NCF0 446 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 RFNGQ9Y644 331 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 UNC80Q8N2C7 3258 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 RALGAPA1Q6GYQ0 2036 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 KNL1Q8NG31 2342 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 AQP7P3A6NL99 342 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 IGLV3-19P01714 112 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 NDUFB7P17568 137 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 OMGP23515 440 aa17.11■□□□□ 0.33
SDF4-205ENST00000465727 FKBP2P26885 142 aaKnown RBP17.11■□□□□ 0.33
SDF4-205ENST00000465727 EXT1Q16394 746 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms