RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NEURL1O76050 574 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 OR1D5P58170 312 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 DCAF12L2Q5VW00 463 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 TRNP1Q6NT89 227 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 PSMG3Q9BT73 122 aaPredicted RBP11.83□□□□□ -0.52
USP40-208ENST00000450966 CHST5Q9GZS9 411 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 DECR2Q9NUI1 292 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 R4GMQ9 66 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 A0A087WWC5 75 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 BCL3P20749 454 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 SUB1P53999 127 aaKnown RBP eCLIP11.83□□□□□ -0.52
USP40-208ENST00000450966 LIM2P55344 173 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 SMIM21Q3B7S5 101 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 OR5A1Q8NGJ0 315 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 BOD1Q96IK1 185 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 SPSB2Q99619 263 aa11.83□□□□□ -0.52
USP40-208ENST00000450966 PDE4DIPQ5VU43 2346 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 OR4C45A6NMZ5 311 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 H3BMH7 237 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 VAMP5O95183 116 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 CYC1P08574 325 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 GLRA1P23415 457 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 ZNF506Q5JVG8 444 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 MRGPRDQ8TDS7 321 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 NKX6-3A6NJ46 265 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 IL3RAP26951 378 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 GABREP78334 506 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 SGMS2Q8NHU3 365 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 MRPL30Q8TCC3 161 aaKnown RBP11.82□□□□□ -0.52
USP40-208ENST00000450966 ERGIC1Q969X5 290 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 LSM2Q9Y333 95 aaKnown RBP11.82□□□□□ -0.52
USP40-208ENST00000450966 RREB1Q92766 1687 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 MICAL3Q7RTP6 2002 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 LMO7DNF2Z398 122 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 G3V3Y1 287 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 TEX29Q8N6K0 151 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 OR11G2Q8NGC1 345 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 SLC37A2Q8TED4 501 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 FBLIM1Q8WUP2 373 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 RAB37Q96AX2 223 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 GNG12Q9UBI6 72 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 SLC45A2Q9UMX9 530 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 H3BP45 60 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 LINC01565O15544 149 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 SMIM13P0DJ93 91 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 UCNP55089 124 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 RTL8BQ17RB0 113 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 RPS19BP1Q86WX3 136 aaKnown RBP11.82□□□□□ -0.52
USP40-208ENST00000450966 MORN4Q8NDC4 146 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 SFRP2Q96HF1 295 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 B3GAT1Q9P2W7 334 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 LAMB1P07942 1786 aa11.82□□□□□ -0.52
USP40-208ENST00000450966 MYH14Q7Z406 1995 aaKnown RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 EIF4E2O60573 245 aaKnown RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 TNFSF15O95150 251 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 MT-ATP6P00846 226 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 SMAGPQ0VAQ4 97 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 FOXC1Q12948 553 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 PIGTQ969N2 578 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 SMPD2O60906 423 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 UTS2O95399 124 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 CTSDP07339 412 aaPredicted RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 HOXC4P09017 264 aaPredicted RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 VSIG10L2P0DP72 767 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 PPICP45877 212 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 DYNLT3P51808 116 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 ARF6P62330 175 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 SLC25A22Q9H936 323 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 TMED7-TICAM2A0A0A6YYA0 188 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 LRRC30A6NM36 301 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 CAPZBP47756 277 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 LGALS4P56470 323 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 RNF165Q6ZSG1 346 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 LINC00346Q8IVM7 164 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 HMGCLL1Q8TB92 370 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 KCNK15Q9H427 330 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 YBX2Q9Y2T7 364 aaKnown RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 TMED7Q9Y3B3 224 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 OR51B4Q9Y5P0 310 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 AUP1Q9Y679 476 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 EFNB1P98172 346 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 PRAMEF5Q5TYX0 476 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 PRAMEF6Q5VXH4 476 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 DMKNQ6E0U4 476 aaPredicted RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 SAP30LQ9HAJ7 183 aa11.81□□□□□ -0.52
USP40-208ENST00000450966 WSB2Q9NYS7 404 aaPredicted RBP11.81□□□□□ -0.52
USP40-208ENST00000450966 LILRA6Q6PI73 481 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 SCGB1D4Q6XE38 83 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 PELI1Q96FA3 418 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 SPCS1Q9Y6A9 102 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 LAMB2P55268 1798 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 C19orf67A6NJJ6 358 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 PRSS1P07477 247 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 CAMPP49913 170 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 DCAF10Q5QP82 559 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 MFSD12Q6NUT3 480 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 ZG16BQ96DA0 208 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 HES4Q9HCC6 221 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 PIGLQ9Y2B2 252 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms