RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 AMY2BP19961 511 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 LMO4P61968 165 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 IL13RA1P78552 427 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 COL10A1Q03692 680 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 IKZF1Q13422 519 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 TAF9Q16594 264 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 Q6P435 159 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 MZT2AQ6P582 158 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 ZNF561Q8N587 486 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 CHST4Q8NCG5 386 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 OR8B3Q8NGG8 313 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 RAB39BQ96DA2 213 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 OR8B2Q96RD0 313 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 TM2D1Q9BX74 207 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 LPAR5Q9H1C0 372 aa13.16□□□□□ -0.3
USP40-206ENST00000443711 METTL21EPA6NDL7 271 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 RNF223E7ERA6 249 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 F5H0A9 414 aaPredicted RBP13.15□□□□□ -0.3
USP40-206ENST00000443711 SIRPB1O00241 398 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 NDUFB3O43676 98 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 OR7C1O76099 320 aaPredicted RBP13.15□□□□□ -0.3
USP40-206ENST00000443711 OR2H2O95918 312 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 IGHV2-5P01817 119 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 TFF1P04155 84 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 GABRR1P24046 479 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 LMO1P25800 156 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 LOXL1Q08397 574 aaPredicted RBP13.15□□□□□ -0.3
USP40-206ENST00000443711 PLA2G7Q13093 441 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 PDCD1Q15116 288 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 FAM89BQ8N5H3 189 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 FAM216BQ8N7L0 139 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 OR5H6Q8NGV6 325 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 SNX22Q96L94 193 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 IFT22Q9H7X7 185 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 SPACA1Q9HBV2 294 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 MAB21L2Q9Y586 359 aa13.15□□□□□ -0.3
USP40-206ENST00000443711 A0A096LNT2 108 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 PITPNBP48739 271 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 EFNB2P52799 333 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 LRRC10Q5BKY1 277 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 ATAD3CQ5T2N8 411 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 ASCC1Q8N9N2 400 aaKnown RBP13.14□□□□□ -0.31
USP40-206ENST00000443711 ZNRF1Q8ND25 227 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 OR56B1Q8NGI3 324 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 PPP1R35Q8TAP8 253 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 NICN1Q9BSH3 213 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 DCUN1D5Q9BTE7 237 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 FAM234AQ9H0X4 552 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 ATG5Q9H1Y0 275 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 RHBDL2Q9NX52 303 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 COMMD3Q9UBI1 195 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 CTSZQ9UBR2 303 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 METRNQ9UJH8 293 aa13.14□□□□□ -0.31
USP40-206ENST00000443711 YLPM1P49750 1951 aaKnown RBP13.14□□□□□ -0.31
USP40-206ENST00000443711 TMEM82A0PJX8 343 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 K7N7A8 449 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 SLC33A1O00400 549 aaPredicted RBP13.13□□□□□ -0.31
USP40-206ENST00000443711 DVL1O14640 695 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 FUT3P21217 361 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 BLVRBP30043 206 aaPredicted RBP13.13□□□□□ -0.31
USP40-206ENST00000443711 VEGFCP49767 419 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 NPY4RP50391 375 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 ESCO2Q56NI9 601 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 PAN3Q58A45 887 aaKnown RBP13.13□□□□□ -0.31
USP40-206ENST00000443711 SAMD12Q8N8I0 201 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 TMEM185AQ8NFB2 350 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 OR5D13Q8NGL4 314 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 PHF21AQ96BD5 680 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 CMTM3Q96MX0 182 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 NEDD4LQ96PU5 975 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 SLC25A10Q9UBX3 287 aaPredicted RBP13.13□□□□□ -0.31
USP40-206ENST00000443711 CLN8Q9UBY8 286 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 MALRD1Q5VYJ5 2156 aa13.13□□□□□ -0.31
USP40-206ENST00000443711 MED13LQ71F56 2210 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 CR1P17927 2039 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 A0A075B6Q4 140 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 TRAV24A0A0B4J272 114 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 A0A1B0GW55 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 GPR37O15354 613 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 SOCS1O15524 211 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 PDCD6O75340 191 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 ZNF737O75373 536 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 SCGNO76038 276 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 TK1P04183 234 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 GLAP06280 429 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L2P0CJ85 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L3P0CJ86 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L4P0CJ87 422 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L5P0CJ88 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L6P0CJ89 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L7P0CJ90 424 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 SELLP14151 372 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 GNB2P62879 340 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 UBE2NLQ5JXB2 153 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 WDR25Q64LD2 544 aaPredicted RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 RAB12Q6IQ22 244 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 DUX4L9Q6RFH8 374 aaPredicted RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 METAP1DQ6UB28 335 aaPredicted RBP13.12□□□□□ -0.31
USP40-206ENST00000443711 ZNF841Q6ZN19 808 aa13.12□□□□□ -0.31
USP40-206ENST00000443711 C17orf107Q6ZR85 190 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms